Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_K13
(355 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 67 9e-13
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.001
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 36 0.001
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 36 0.001
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 35 0.004
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 30 0.091
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 29 0.16
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 0.37
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 26 1.5
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 1.5
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 26 2.0
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 26 2.0
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 25 2.6
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 2.6
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 2.6
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 3.4
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 4.5
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 25 4.5
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 24 6.0
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 24 6.0
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 66.9 bits (156), Expect = 9e-13
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Frame = +2
Query: 95 HRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQ---DNKLAIVFSPLLA 265
H K + Q +AI G DV++ MPTG GKSLC+QLPA+++ + +V SPLL+
Sbjct: 516 HLKGFRKNQLEAINGTLSG-KDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLS 574
Query: 266 LIKDQIDHXTKLKITAESINSKMSVKDK 349
L++DQ+DH KL I + ++ + ++
Sbjct: 575 LMQDQLDHLRKLNIPSLPLSGEQPADER 602
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.3 bits (80), Expect = 0.001
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +2
Query: 119 QEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP---AMLQDNKLAIVF-SPLLALIKDQ 280
Q AI + G H V VS T SGKSL +Q+P ++L+DN+ F P +L +DQ
Sbjct: 316 QADAINHLWNGFH-VIVSTSTSSGKSLIYQIPILQSLLEDNQSTAFFVFPTKSLAQDQ 372
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 36.3 bits (80), Expect = 0.001
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Frame = +2
Query: 56 MDHITDKLMQYFG-HRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQD- 229
+ H L QY+G K +S Q Q++ ++ +PTG GKSL F +PA+++
Sbjct: 1173 VQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKK 1232
Query: 230 --------NKLAIVFSPLLALIKDQI 283
N + +V P+++L +D +
Sbjct: 1233 RQTPGKVMNMVTLVLVPMMSLRQDMM 1258
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 36.3 bits (80), Expect = 0.001
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Frame = +2
Query: 56 MDHITDKLMQYFG-HRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQD- 229
+ H L QY+G K +S Q Q++ ++ +PTG GKSL F +PA+++
Sbjct: 1173 VQHCCWALSQYYGLEAKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKK 1232
Query: 230 --------NKLAIVFSPLLALIKDQI 283
N + +V P+++L +D +
Sbjct: 1233 RQTPGKVMNMVTLVLVPMMSLRQDMM 1258
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 34.7 bits (76), Expect = 0.004
Identities = 22/49 (44%), Positives = 28/49 (57%)
Frame = +2
Query: 68 TDKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP 214
T ++ G+ K S +Q QAI AIT G DV TGSGK++ F LP
Sbjct: 429 TISVINSLGYEKPTS-IQAQAIPAITSG-RDVIGVAKTGSGKTIAFLLP 475
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 30.3 bits (65), Expect = 0.091
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP---AMLQDNKLAIVF-SPLLALIKDQI 283
+Q Q I +++V PTGSGK++ +L A+ K +V+ +P+ AL+K+++
Sbjct: 1138 VQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERV 1197
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 29.5 bits (63), Expect = 0.16
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 110 SELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVFSP 256
+E+Q+++I + G DV + TGSGK+L F +P + + A+ F P
Sbjct: 113 TEIQKRSIPPLLAG-RDVLGAAKTGSGKTLAFLIPTI--EMLYALKFKP 158
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.5 bits (63), Expect = 0.16
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +2
Query: 101 KXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM----LQDNKLAIVFSPLLAL 268
K +++Q Q ++ V++ P GSGK++C +L + +D A+ +P+ +
Sbjct: 1363 KFFNKIQTQVFNSVYKTNDSVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEI 1422
Query: 269 I 271
+
Sbjct: 1423 V 1423
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 0.37
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 110 SELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP 214
+E+Q+Q I + G D+ + TGSGK+L F +P
Sbjct: 63 TEIQKQCIPSALKG-RDILGAAKTGSGKTLAFIVP 96
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 26.2 bits (55), Expect = 1.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 101 KXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
K + +Q++AI + DV TGSGK+ F LP +
Sbjct: 67 KTPTPIQQEAI-PVVLNKRDVIGLAQTGSGKTAAFALPVI 105
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 26.2 bits (55), Expect = 1.5
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 101 KXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVFSPLLALI 271
K + +Q + I + G DV TGSGK+ F +P M++ K + S ALI
Sbjct: 90 KAPTPIQRKTIPLLLEG-RDVVGMARTGSGKTAAFVIP-MIEHLKSTLANSNTRALI 144
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 158 DVYVSMPTGSGKSLCFQLP 214
DV VS TGSGK+L + +P
Sbjct: 175 DVCVSAATGSGKTLSYVIP 193
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 2.0
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDN 232
+Q+QA G V +S TGSGK+L + LPA++ N
Sbjct: 148 IQQQAWPMAMSGRDMVGISA-TGSGKTLSYCLPAIVHIN 185
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 62 HITDKLMQYFG-HRKXKSELQEQAIRAITXGVHDVYVSMPTGS 187
H+ Y G H + + AI I G+HDV +S+P GS
Sbjct: 414 HVAGLSAYYLGLHPAASASEVKDAI--IKMGIHDVLLSIPVGS 454
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 2.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 158 DVYVSMPTGSGKSLCFQLP 214
D ++ TGSGK+L + LP
Sbjct: 180 DAFIEAQTGSGKTLAYLLP 198
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 2.6
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 65 ITDKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM-----LQD 229
++ KL + + K + +Q + G DV TGSGK++ F +PA+ L D
Sbjct: 174 VSAKLREGLKNYKEPTPIQAATWPYLLAG-RDVVGIAETGSGKTVAFGIPALQYLNGLSD 232
Query: 230 NK 235
NK
Sbjct: 233 NK 234
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.0 bits (52), Expect = 3.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 98 RKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCF 205
R + E + A G + VS+ TGSGK+ F
Sbjct: 28 RPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALF 63
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 24.6 bits (51), Expect = 4.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 187 WKIIVFPTACNVT 225
W+I++FP CN T
Sbjct: 80 WRIVLFPKGCNQT 92
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
+Q AI I D+ PTGSGK++ + P +
Sbjct: 72 IQRYAIPTI-GSKRDLLACAPTGSGKTIAYLFPIL 105
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 6.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 158 DVYVSMPTGSGKSLCFQLP 214
D+ V TGSGK+L + LP
Sbjct: 40 DLVVEAVTGSGKTLAYLLP 58
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 6.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 101 KXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKL 238
K S +Q AI + D+ TGSGK+ F +P ++ +KL
Sbjct: 270 KEPSSIQRAAIPVLLQR-KDLIGIAETGSGKTAAFIIPLIIAISKL 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,146
Number of Sequences: 5004
Number of extensions: 20612
Number of successful extensions: 70
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -