Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_K13
(355 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 86 6e-18
U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical p... 66 7e-12
U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical p... 66 7e-12
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 63 6e-11
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 63 6e-11
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 58 2e-09
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ... 36 0.011
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 34 0.025
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 33 0.043
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 33 0.057
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 31 0.18
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 31 0.31
Z34533-4|CAA84299.2| 577|Caenorhabditis elegans Hypothetical pr... 30 0.53
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 30 0.53
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 30 0.53
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 0.71
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 0.71
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 0.71
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 0.71
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 29 0.71
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 0.71
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 0.71
U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical pr... 29 0.93
U58754-6|AAK72081.1| 325|Caenorhabditis elegans Serpentine rece... 29 0.93
AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical... 29 0.93
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 1.2
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 28 2.2
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z14092-1|CAA78468.2| 551|Caenorhabditis elegans Hypothetical pr... 27 2.8
U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein... 27 2.8
AY090486-1|AAM11895.1| 551|Caenorhabditis elegans high-affinity... 27 2.8
AL032631-14|CAA21578.1| 243|Caenorhabditis elegans Hypothetical... 27 5.0
AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical ... 27 5.0
U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine rece... 26 8.7
U40061-6|AAA81152.2| 426|Caenorhabditis elegans Hypothetical pr... 26 8.7
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 26 8.7
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 26 8.7
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 86.2 bits (204), Expect = 6e-18
Identities = 43/94 (45%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Frame = +2
Query: 71 DKL-MQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIV 247
DK+ ++ F H+K +S LQ QAI I DVYVS+PTG+GKSLC+QLPA++ + +V
Sbjct: 166 DKVFLELFCHKKYRSRLQMQAINCILKRKCDVYVSLPTGAGKSLCYQLPAVVHGG-ITVV 224
Query: 248 FSPLLALIKDQIDHXTKLKITAESINSKMSVKDK 349
SPL+AL+KDQI + I E++NS ++ ++
Sbjct: 225 ISPLIALMKDQISSLKRKGIPCETLNSTLTTVER 258
>U00052-13|AAW88393.1| 608|Caenorhabditis elegans Hypothetical
protein K02F3.12b protein.
Length = 608
Score = 66.1 bits (154), Expect = 7e-12
Identities = 40/96 (41%), Positives = 56/96 (58%)
Frame = +2
Query: 59 DHITDKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKL 238
D T L + F H + LQ AI A+ D V + TG GKSLC+QLPA+L N L
Sbjct: 72 DEATKILKEQF-HLEKFRPLQRAAINAVM-SKEDAVVILSTGGGKSLCYQLPALLA-NGL 128
Query: 239 AIVFSPLLALIKDQIDHXTKLKITAESINSKMSVKD 346
A+V SPL++L++DQI L I + S+N+ S ++
Sbjct: 129 ALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEE 164
>U00052-12|AAK21428.2| 631|Caenorhabditis elegans Hypothetical
protein K02F3.12a protein.
Length = 631
Score = 66.1 bits (154), Expect = 7e-12
Identities = 40/96 (41%), Positives = 56/96 (58%)
Frame = +2
Query: 59 DHITDKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKL 238
D T L + F H + LQ AI A+ D V + TG GKSLC+QLPA+L N L
Sbjct: 95 DEATKILKEQF-HLEKFRPLQRAAINAVM-SKEDAVVILSTGGGKSLCYQLPALLA-NGL 151
Query: 239 AIVFSPLLALIKDQIDHXTKLKITAESINSKMSVKD 346
A+V SPL++L++DQI L I + S+N+ S ++
Sbjct: 152 ALVVSPLISLVEDQILQLRSLGIDSSSLNANTSKEE 187
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 62.9 bits (146), Expect = 6e-11
Identities = 36/94 (38%), Positives = 55/94 (58%)
Frame = +2
Query: 71 DKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVF 250
D L FG + + Q+Q I + G HD +V MPTG+GKSLC+QLPA++ + +V
Sbjct: 237 DTLKSKFGFNQFRHR-QKQCILSTLMG-HDTFVLMPTGAGKSLCYQLPAVILPG-VTVVV 293
Query: 251 SPLLALIKDQIDHXTKLKITAESINSKMSVKDKE 352
SPL +LI+DQ +L I E++ + + +E
Sbjct: 294 SPLRSLIEDQKMKMKELGIGCEALTADLGAPAQE 327
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 62.9 bits (146), Expect = 6e-11
Identities = 36/94 (38%), Positives = 55/94 (58%)
Frame = +2
Query: 71 DKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVF 250
D L FG + + Q+Q I + G HD +V MPTG+GKSLC+QLPA++ + +V
Sbjct: 237 DTLKSKFGFNQFRHR-QKQCILSTLMG-HDTFVLMPTGAGKSLCYQLPAVILPG-VTVVV 293
Query: 251 SPLLALIKDQIDHXTKLKITAESINSKMSVKDKE 352
SPL +LI+DQ +L I E++ + + +E
Sbjct: 294 SPLRSLIEDQKMKMKELGIGCEALTADLGAPAQE 327
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 58.0 bits (134), Expect = 2e-09
Identities = 29/69 (42%), Positives = 46/69 (66%)
Frame = +2
Query: 77 LMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVFSP 256
L ++FGH+ + E Q +R + G D +V M TG GKS+C+QLP++L N + +V SP
Sbjct: 219 LNEFFGHKGFR-EKQWDVVRNVLGG-KDQFVLMSTGYGKSVCYQLPSLLL-NSMTVVVSP 275
Query: 257 LLALIKDQI 283
L++L+ DQ+
Sbjct: 276 LISLMNDQV 284
>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
protein Y54E2A.6 protein.
Length = 1798
Score = 35.5 bits (78), Expect = 0.011
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Frame = +2
Query: 167 VSMPTGSGKSLCFQLP--AMLQDNK-LAIVF-SPLLALIKDQIDHXTK 298
+ PTGSGK+LC +L +LQD+ + +V+ +PL +L+++++D K
Sbjct: 981 IGAPTGSGKTLCAELAMFRLLQDHPGMKVVYIAPLKSLVRERVDDWKK 1028
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 34.3 bits (75), Expect = 0.025
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Frame = +2
Query: 158 DVYVSMPTGSGKSLCFQLP--AMLQDNKL------AIVFSPLLALIKDQID----HXTKL 301
DV V PTGSGK+L F LP M+Q+ KL A++ SP L + KL
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKL 107
Query: 302 KITAESINSKMSV 340
+T E++ V
Sbjct: 108 NLTVETVTGGQKV 120
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 33.5 bits (73), Expect = 0.043
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Frame = +2
Query: 158 DVYVSMPTGSGKSLCFQLPAML----QDNKL--AIVFSPLLALIKDQID 286
DV ++ PTGSGK++C+ LP + + +K+ A++ P+ L+ +D
Sbjct: 158 DVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVD 206
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 33.1 bits (72), Expect = 0.057
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +2
Query: 110 SELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKL 238
+E+Q ++I + G DV S TGSGK+L F LPA+ +KL
Sbjct: 92 TEIQAKSIDPLLEG-KDVLASAKTGSGKTLAFLLPAIELLHKL 133
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 110 SELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
S +Q Q+I +T +V S PTGSGK+L F LP +
Sbjct: 150 SPIQMQSIPFMTER-RNVLASAPTGSGKTLAFALPVI 185
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 30.7 bits (66), Expect = 0.31
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 77 LMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP 214
+++ F + K S +Q QAI +I G DV TGSGK+L F LP
Sbjct: 318 VLKKFEYSKPTS-IQAQAIPSIMSG-RDVIGIAKTGSGKTLAFLLP 361
>Z34533-4|CAA84299.2| 577|Caenorhabditis elegans Hypothetical
protein B0285.6 protein.
Length = 577
Score = 29.9 bits (64), Expect = 0.53
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +2
Query: 149 GVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVFSPLLALIKDQIDHXTKLKITAESINS 328
G H +Y S+PT G S F LP N AIV+ + D + L I +I +
Sbjct: 485 GAHPLYFSIPTAIGPSFSFMLPMATPAN--AIVYETKTIRMIDMVSCGVFLNIFCIAITA 542
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 29.9 bits (64), Expect = 0.53
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +2
Query: 14 NETHXXXXXXXXXXMDHITDKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGK 193
N H +DH K ++ G + + +Q + I I G DV TGSGK
Sbjct: 17 NRKHKKAGGWQQIGLDHSVYKAIEKKGFNQP-TPIQRKTIPCIMDG-KDVVAMSRTGSGK 74
Query: 194 SLCFQLPAMLQDNK 235
+ F +P MLQ K
Sbjct: 75 TAAFVIP-MLQKLK 87
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 29.9 bits (64), Expect = 0.53
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = +2
Query: 14 NETHXXXXXXXXXXMDHITDKLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGK 193
N H +DH K ++ G + + +Q + I I G DV TGSGK
Sbjct: 17 NRKHKKAGGWQQIGLDHSVYKAIEKKGFNQP-TPIQRKTIPCIMDG-KDVVAMSRTGSGK 74
Query: 194 SLCFQLPAMLQDNK 235
+ F +P MLQ K
Sbjct: 75 TAAFVIP-MLQKLK 87
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 74 KLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM---LQDNKL 238
K + + G+ K + +Q+ A+ + G +D+ TGSGK+ F LP M + DN L
Sbjct: 354 KNVAHAGYSKT-TPIQQYALPLVHQG-YDIMACAQTGSGKTAAFLLPIMTRLIDDNNL 409
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 74 KLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
K + + G+ K + +Q+ + I G HD+ TGSGK+ F LP M
Sbjct: 565 KNVAHAGYTKT-TPIQQYTLPLIHQG-HDIMACAQTGSGKTAAFLLPIM 611
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 74 KLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
K + + G+ K + +Q+ + I G HD+ TGSGK+ F LP M
Sbjct: 565 KNVAHAGYTKT-TPIQQYTLPLIHQG-HDIMACAQTGSGKTAAFLLPIM 611
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 74 KLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM---LQDNKL 238
K + + G+ K + +Q+ A+ + G +D+ TGSGK+ F LP M + DN L
Sbjct: 354 KNVAHAGYSKT-TPIQQYALPLVHQG-YDIMACAQTGSGKTAAFLLPIMTRLIDDNNL 409
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 29.5 bits (63), Expect = 0.71
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 110 SELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQ-DNKLA 241
S +Q Q + G + VS TGSGK+L F LPA+L D +LA
Sbjct: 108 SPIQSQMWPLLLSGQDCIGVSQ-TGSGKTLAFLLPALLHIDAQLA 151
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 0.71
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 74 KLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM---LQDNKL 238
K + + G+ K + +Q+ A+ + G +D+ TGSGK+ F LP M + DN L
Sbjct: 354 KNVAHAGYSKT-TPIQQYALPLVHQG-YDIMACAQTGSGKTAAFLLPIMTRLIDDNNL 409
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.5 bits (63), Expect = 0.71
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 74 KLMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
K + + G+ K + +Q+ + I G HD+ TGSGK+ F LP M
Sbjct: 565 KNVAHAGYTKT-TPIQQYTLPLIHQG-HDIMACAQTGSGKTAAFLLPIM 611
>U64840-7|AAB04965.1| 340|Caenorhabditis elegans Hypothetical
protein ZC317.1 protein.
Length = 340
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 107 KSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
K +Q+ +I+ I G + V PTG GK+ F +PA+
Sbjct: 16 KRRVQQMSIQVIREG-RGLVVEAPTGIGKTYAFLIPAI 52
>U58754-6|AAK72081.1| 325|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 12 protein.
Length = 325
Score = 29.1 bits (62), Expect = 0.93
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 187 RSCWHGYINIMHTXSNSSYSLFLKFTF 107
R+C+ GY ++H S+S +SL L F++
Sbjct: 87 RTCFFGYSLMLHFLSHSLWSLLLSFSY 113
>AC024830-10|AAF59610.3| 728|Caenorhabditis elegans Hypothetical
protein Y55F3BR.1 protein.
Length = 728
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP 214
+Q +AI AI G D ++ TGSGK+ F LP
Sbjct: 28 VQSEAIPAILGGA-DALIAAETGSGKTGAFSLP 59
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 158 DVYVSMPTGSGKSLCFQLPAMLQDNKLA 241
D+ TGSGK+L F LPA++ K A
Sbjct: 168 DIISIAKTGSGKTLAFMLPALVHITKQA 195
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 77 LMQYFGHRKXKSELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP 214
++ +F +E+Q + A DV + TGSGK+L F +P
Sbjct: 1 MLIFFFRFSEPTEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIP 46
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
ZK593.5 protein.
Length = 1326
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 224 QDNKLAI--VFSPLLALIKDQIDHXTKLKITAESINSKMSVKDKE 352
QD +AI F P+ ALIK D K+ T ES + S +K+
Sbjct: 961 QDGYIAIDKTFDPIRALIKSLRDSLEKVNSTLESAKMEHSAPEKK 1005
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 110 SELQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP 214
+E+Q + A DV + TGSGK+L F +P
Sbjct: 179 TEIQSAVLPAAVRDRQDVLGAAETGSGKTLAFGIP 213
>Z14092-1|CAA78468.2| 551|Caenorhabditis elegans Hypothetical
protein R107.1 protein.
Length = 551
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 137 AITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVF 250
A + GVH +Y+++PT S F LP N A+V+
Sbjct: 458 AESMGVHPLYLALPTTVACSFAFMLPISTPPN--AVVY 493
>U53141-4|AAA96106.1| 528|Caenorhabditis elegans Mutator protein 14
protein.
Length = 528
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAM 220
+Q+ +I+ I G + V PTG GK+ F +PA+
Sbjct: 119 VQQMSIQVIREG-RGLVVEAPTGIGKTYAFLIPAI 152
>AY090486-1|AAM11895.1| 551|Caenorhabditis elegans high-affinity
dicarboxylate transporterINDY3 protein.
Length = 551
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 137 AITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVF 250
A + GVH +Y+++PT S F LP N A+V+
Sbjct: 458 AESMGVHPLYLALPTTVACSFAFMLPISTPPN--AVVY 493
>AL032631-14|CAA21578.1| 243|Caenorhabditis elegans Hypothetical
protein Y106G6H.15 protein.
Length = 243
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 177 QQDLENHCVSNCLQCYKT 230
QQ LEN+C C+ C K+
Sbjct: 51 QQKLENNCEETCMNCTKS 68
>AF125963-6|AAK95885.1| 520|Caenorhabditis elegans Hypothetical
protein Y38A10A.6 protein.
Length = 520
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLPAMLQDNKLAIVFSPLLALI 271
+Q+++I+AI + V PTG GK+ F +PA+ ++A+ PLL I
Sbjct: 118 VQQKSIQAIRDR-RGLLVDAPTGIGKTYAFLIPAI----EIALRERPLLTNI 164
>U97012-6|AAK39147.1| 337|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 15 protein.
Length = 337
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 184 SCWHGYINIMHTXSNSSYSLFLKFTFXFSV 95
+C G +HT ++S +SLF+ F F + +
Sbjct: 93 TCAIGLSMYIHTLTHSLWSLFISFVFRYLI 122
>U40061-6|AAA81152.2| 426|Caenorhabditis elegans Hypothetical
protein ZK563.6 protein.
Length = 426
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 230 CLVTLQAVGNTM 195
CL+TLQ VGNTM
Sbjct: 97 CLMTLQTVGNTM 108
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 116 LQEQAIRAITXGVHDVYVSMPTGSGKSLCFQLP---AMLQDNKLAI 244
+Q+ +I A+ G D+ TGSGK+ F +P A+LQD A+
Sbjct: 192 VQKYSIPALQGG-RDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAV 236
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/43 (32%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Frame = +2
Query: 167 VSMPTGSGKSLCFQLPAMLQD----NKLAIVFSPLLALIKDQI 283
+S+PTG+GK+L ++ ML++ + AI+ P +A+++++I
Sbjct: 189 LSLPTGAGKTLIAEV-LMLREAIVRKRNAILVLPYVAIVQEKI 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,071,383
Number of Sequences: 27780
Number of extensions: 117145
Number of successful extensions: 362
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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