Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K10
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    33   0.025
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    27   2.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   5.0  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   5.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   8.7  

>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = +1

Query: 73  DIEVEECEEFSYRGNAGTIILINV----YDPLSCKFP---QIAHVATCQALKHYLRTSTS 231
           D +++E E F+  G    + +I V     DP+    P   Q+A +   Q     + T+ S
Sbjct: 4   DEQIDETENFAI-GKYAILFVIEVSPSMLDPVDEFTPSSLQMALICAYQLAAQRVITNPS 62

Query: 232 HNVGVVLYGIDDPTSNIKNVLEVMPLAPPNMD 327
             +GV+LYG +  T    N + ++ + PP+ +
Sbjct: 63  DIMGVLLYGTESSTGRFANQMMLLDIDPPDAE 94


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 487 PLSEDETPTFDRIVELNNSEIILKLINLSDS 579
           PLSE E  TF RIV+     I+ KL N  +S
Sbjct: 163 PLSEAEECTFVRIVDFGAELIVHKLENYLES 193


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 424 NSCTKTLSSQTIILLSRLDTP-PLSEDETPTFDRIVELNNSEIILKLINLSDSE 582
           NS T T+  +    L+  D P   SEDE    ++++EL++ E I  + N S+ +
Sbjct: 372 NSETITVDPEGNWKLNTFDEPVESSEDEFVPKEKVIELSDGEGISTMANKSNDQ 425


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 1/121 (0%)
 Frame = +1

Query: 223 STSHNVGVVLYGIDDPTSNIKNVLEVMPLAPPNMDDYXXXXXXXXXXXXQAKELRLSDAL 402
           S    V +     ++P++ IK  L       PN+D +             + + +  DA+
Sbjct: 155 SDQGGVDIETVAAENPSAIIKRSLP----NSPNLDPHIAEELVDKLGFSSSSKPKAVDAI 210

Query: 403 WYCNKMFNSCTKTLSSQTIILLSRLDTPPLSEDETPTFDRIVELNNSEI-ILKLINLSDS 579
               K+FN C  T   +   L    D   L  D    FD   E  +S I +L+ I+  D 
Sbjct: 211 VKLYKVFNDCDAT-QVEINPLAETTDHKVLCMDAKLNFDDNAEFRHSNIFVLRDISQEDP 269

Query: 580 E 582
           +
Sbjct: 270 D 270


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +1

Query: 175  IAHVATCQALKHYLRTSTSHNVGV------VLYGIDDPTSNIKNVLEVMPLAP 315
            ++ +   ++ KH L T T   +        V  GI++  SN++N+L V+P  P
Sbjct: 3492 LSEIKHLKSRKHLLLTETFKTLKAFGLQYRVKAGIEENLSNLRNLLAVIPTFP 3544


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 389  CQMRYGTAIKCLIVVQKHYPLKLLFYCQDLIHHLCL 496
            CQ+ YG +I+ L+     Y +  +  C D++ H  L
Sbjct: 4091 CQL-YGVSIQSLVFFTWGYYIASVLNCPDIVFHTVL 4125


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 460 ILLSRLDTPPLSEDETPTFDRIVELNNSEIILKLINLSDS 579
           +L   L +P L+   TP  +    L  SE++ K++N+S++
Sbjct: 852 VLFRPLRSPALNTFSTPATEPPEHLVLSELLKKMVNISNN 891


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,179
Number of Sequences: 5004
Number of extensions: 42681
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)