Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_K07
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 105 2e-23
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 104 3e-23
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 104 3e-23
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 103 6e-23
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 35 0.033
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 29 1.2
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 3.8
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 27 6.6
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 27 6.6
01_01_0088 + 688792-691441,691629-693013 27 6.6
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465... 27 8.7
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 105 bits (252), Expect = 2e-23
Identities = 47/73 (64%), Positives = 59/73 (80%)
Frame = +2
Query: 95 VNAVLQSSKDKKRNFXETVELQXGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 274
++ V+ SK+K R F ETVELQ GLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH
Sbjct: 31 ISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQH 90
Query: 275 CDEAKTLNVPCMD 313
+EA+ + + MD
Sbjct: 91 VEEAEKIGLDYMD 103
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
K L + K LASE++IKQIPR +G
Sbjct: 114 KKLVKKLAKKYHAFLASEAIIKQIPRLLG 142
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 104 bits (250), Expect = 3e-23
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = +2
Query: 95 VNAVLQSSKDKKRNFXETVELQXGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 274
++ V+ K+K R F ETVELQ GLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH
Sbjct: 13 ISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQH 72
Query: 275 CDEAKTLNVPCMD 313
+EA+ + + MD
Sbjct: 73 VEEAEKIGLDYMD 85
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
K L + K LASE++IKQIPR +G
Sbjct: 96 KKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 104 bits (250), Expect = 3e-23
Identities = 44/73 (60%), Positives = 59/73 (80%)
Frame = +2
Query: 95 VNAVLQSSKDKKRNFXETVELQXGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 274
++ + S++K+R F ET+ELQ GLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH
Sbjct: 13 ISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQH 72
Query: 275 CDEAKTLNVPCMD 313
+EA+ + + MD
Sbjct: 73 VEEAEKMGLDYMD 85
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
K L + K LASE++IKQIPR +G
Sbjct: 96 KKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 103 bits (247), Expect = 6e-23
Identities = 43/73 (58%), Positives = 59/73 (80%)
Frame = +2
Query: 95 VNAVLQSSKDKKRNFXETVELQXGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQH 274
++ + S++K+R F ET+ELQ GLKNYDPQKDKRFSG+VKL +IPRPK++VC+LGD QH
Sbjct: 13 ISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKLKVCMLGDAQH 72
Query: 275 CDEAKTLNVPCMD 313
+EA+ + + MD
Sbjct: 73 VEEAEKMGLDYMD 85
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
K L + K LASE++IKQIPR +G
Sbjct: 96 KKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 34.7 bits (76), Expect = 0.033
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +2
Query: 77 TRSTSCVNAVLQ--SSKDKKRNFXETVELQXGLKNYDPQK-DKRFSGTVKLKYIPRPKMQ 247
T + S V A L S+ +KKRNF ETVE L DP++ D+ G + L + ++
Sbjct: 265 TPAVSSVTARLPTTSANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVR 323
Query: 248 VCVLGDQQHCDEAK 289
V V + DEA+
Sbjct: 324 VAVFAEGPAADEAR 337
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +2
Query: 95 VNAVLQSSKDKK-RNFXETVELQXGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVCVLGDQ 268
+ + LQS K K R E + D + K + +K + PK +VCV D
Sbjct: 261 LKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVCVPIDP 320
Query: 269 QHCDEAKTLNVPCM 310
+CD+ VP +
Sbjct: 321 NNCDDFDPTTVPTL 334
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 245 AFSAAVCILALQCRRNACPSVGH 177
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 344 CXYSIFSKXQHPYMAHSRF*PRHNAAGLQER 252
C SIFS +HP+ S+ + AGL+E+
Sbjct: 478 CLNSIFSTSEHPFQLGSKRLHETSLAGLEEK 508
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 13 NXPSVVIGGSLTNKMSSKVSRDTLYELRECR 105
N SV+I GS ++ + V RDTL E+R R
Sbjct: 1074 NLRSVMIFGSYRSRRIANVVRDTLNEIRALR 1104
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 13 NXPSVVIGGSLTNKMSSKVSRDTLYELRECR 105
N SV+I GS ++ + V RDTL E+R R
Sbjct: 630 NLRSVMIFGSYRSRRIANVVRDTLNEIRALR 660
>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
12346712-12347567,12347760-12347883,12348469-12348688,
12348771-12349229,12349318-12349519
Length = 1302
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 265 VSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTXLKLYSLXKVTF 128
+S N LH+ Y L + G L L W+ +L T + L V F
Sbjct: 1123 LSHNTLLHYPRLYETGLQNEGYNLTLFWITMLDTLWQSLVLFYVPF 1168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,103,350
Number of Sequences: 37544
Number of extensions: 164983
Number of successful extensions: 411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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