Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K07
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   104   2e-23
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    79   2e-15
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    33   0.089
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    30   0.83 

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  104 bits (250), Expect = 2e-23
 Identities = 45/69 (65%), Positives = 55/69 (79%)
 Frame = +2

Query: 104 VLQSSKDKKRNFXETVELQXGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 283
           VL+ S +K R F ET+ELQ GLKNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DE
Sbjct: 16  VLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDE 75

Query: 284 AKTLNVPCM 310
           A   ++P M
Sbjct: 76  AAAGDIPSM 84



 Score = 30.3 bits (65), Expect = 0.63
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
           K L +   K+    +ASESLIKQIPR +G
Sbjct: 96  KKLIKKLAKSYDAFIASESLIKQIPRILG 124


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 32/47 (68%), Positives = 39/47 (82%)
 Frame = +2

Query: 170 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCM 310
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSM 54



 Score = 30.3 bits (65), Expect = 0.63
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
           K L +   K+    +ASESLIKQIPR +G
Sbjct: 66  KKLIKKLAKSYDAFIASESLIKQIPRILG 94


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 33.1 bits (72), Expect = 0.089
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 242 MQVCVLGDQQHCDEAKTLNVPCM 310
           M+VCV GDQ H DEA   ++P M
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSM 23



 Score = 30.3 bits (65), Expect = 0.63
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 345 KSLSRNWPKNXMLSLASESLIKQIPRFVG 431
           K L +   K+    +ASESLIKQIPR +G
Sbjct: 35  KKLIKKLAKSYDAFIASESLIKQIPRILG 63


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 119 KDKKRNFXETVELQXGLKNYDPQKDKRFSGTVKLKYI 229
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,160
Number of Sequences: 27780
Number of extensions: 149415
Number of successful extensions: 318
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)