Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_K06
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.73 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   5.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   6.8  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    25   6.8  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.0  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.0  

>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +1

Query: 43  NPPDDNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRVPT--IDQCYDDD 216
           N  DD+++R FC  L  ++  P + F  +    N + +  +   Y    T   D  Y+D 
Sbjct: 263 NSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNWEVFHDFMSTYASTTTSQTDSSYND- 321

Query: 217 VVCDFEANAQFKRDRAVD-SEILSILRQRY 303
            V D   ++Q     ++D S++ SIL   Y
Sbjct: 322 -VHDIVGSSQPDYLESLDYSQLFSILYALY 350


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 462 HAMLLXHVSFSRITISTEVTIXNEPSFLSRLVLVPKRPAF 343
           HA  L   SFS  T++T   I N P+ +    +V   P++
Sbjct: 436 HAHSLTSSSFSTKTLATTKEIQNSPTLVESSTVVHHDPSY 475


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 EANAQFKRDRAVDSEILSILRQRYE 306
           +AN  F RD  ++  +LS L +RYE
Sbjct: 487 DANDSFSRDLRLEKILLSHLSKRYE 511


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 205 YDDDVVCDFE-ANAQFKRDRAVDSEILSILRQRYEDCMMY 321
           YDDDV C F+   A+   D  +D  I+  +R R  D ++Y
Sbjct: 254 YDDDVDCGFKIIEAREIDDLGIDG-IVKKIRDRVGDNLVY 292


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +1

Query: 247 FKRDRAVDSEILSILRQRYEDCMMYEXPDHATKCRSLWDKYKSAEEAWFIXYGDLGAYGD 426
           +  DR V +  +  +     DC      DH+  C  L      A+E + +   +   Y +
Sbjct: 220 YPNDRLVVAHEIGHILGLIHDCNKKSCGDHSEACCPLSSSLCDAQELYIMNPSNSYTYAN 279

Query: 427 AR--KAYMXQKHRMVWERRNGPLSDLTK 504
            R     + Q H +V E++   LS L+K
Sbjct: 280 LRFSDCSILQLHSLV-EKKYVSLSCLSK 306


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 82  ALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRR 183
           ALY+TVDAP T      +EP + +Y   H   R+
Sbjct: 207 ALYSTVDAPET------LEPLKHRYKSQHHRLRQ 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,358
Number of Sequences: 5004
Number of extensions: 37901
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)