Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J24
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 135 3e-33
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 52 5e-08
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 28 0.68
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 3.6
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 4.8
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 4.8
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 8.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 8.4
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 8.4
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 135 bits (327), Expect = 3e-33
Identities = 63/111 (56%), Positives = 80/111 (72%)
Frame = +2
Query: 164 SVPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVELIKQRLSNVKHKIL 343
+VP +AP+HCPG SE+AG ASAC GCPNQ ICAS + DP + L+ +RL +KHKIL
Sbjct: 6 TVPLDAPEHCPGPSSENAGTASACEGCPNQQICASAPRGE-DPDLPLVVERLKEIKHKIL 64
Query: 344 ILSGKGGVGKSTVTSIIGXGLASMSPDINVGXLDADICGPSPARVLGVRGE 496
+LSGKGGVGKST +S + GL S+ D +G +D DICGPS R++GV E
Sbjct: 65 VLSGKGGVGKSTFSSQLAWGL-SLEEDKQIGLMDVDICGPSIPRIMGVEKE 114
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 52.0 bits (119), Expect = 5e-08
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +2
Query: 317 LSNVKHKILILSGKGGVGKSTVTSIIGXGLAS---MSPDINVGXLDADICGPSPARVLGV 487
+ V+H IL+LSGKGGVGKS+VT+ + L S + G LD D+ GPS R+ G
Sbjct: 1 MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60
Query: 488 RGE 496
E
Sbjct: 61 DAE 63
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 0.68
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 287 DPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGXGLASMSPDI 427
DP ++ L K + + GKGGVGK+T + + ++ + +
Sbjct: 4 DPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSV 50
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +2
Query: 290 PAVELIKQRLSNVKH-KILILSGKGGVGKST--VTSIIGXGLASMSPDI 427
PA E ++ + ++H +++++SG+ G GKST V I+ L+S D+
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDL 626
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 177 TRRNIALELKARMLVKLQPVLDAL 248
++RNI L L+ RM++++ P D+L
Sbjct: 2054 SKRNILLNLEHRMMLQMAPDCDSL 2077
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 4.8
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -2
Query: 301 FYCGVRLRCFSRCANVLIRASSTG*SFTSILALSSRAMLRRVVWYAAHI*YYYLTTINSL 122
F + ++CF + L+ L LSS LRR W + + LT ++ L
Sbjct: 99 FDASIAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFAL--FVLTPLSFL 156
Query: 121 K 119
K
Sbjct: 157 K 157
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.6 bits (51), Expect = 8.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 44 KIFLICNEFVQINSILLNHSIRELGF*RINSRQIVISNMSSVPDNAPQH-CPGTQSEDAG 220
K+F IC+ F ++S + N + +L I+S ++ +M S NA P T E G
Sbjct: 59 KLFAICSHFADLSSSVRN-KVYDLLTSNISSESAILEDMISA--NATDFTVPQTNLETTG 115
Query: 221 KA 226
A
Sbjct: 116 IA 117
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 8.4
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 14 MISDLYQIKTKIFLICNEFVQINSILLNHSIRELGF*RINSRQIVISNMSSVP--DNAPQ 187
M+ + Y+ KIFL+C+ ++ +++ N + + VI + S+P D
Sbjct: 273 MLGNYYRKLIKIFLVCDNYL-LHAAAWNRYFTFTNVQKPATANFVILSALSIPIIDANKL 331
Query: 188 HCPGTQSEDAGKASA 232
P ++EDA +A
Sbjct: 332 SGPSIEAEDAKSKNA 346
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 257 ICASGEASQPDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSIIGXGL 406
IC+ G PD ++ + L+N+ K ++ G +T+ +++ G+
Sbjct: 224 ICSIGAMISPDDDLKNLSNTLANIAEKWVLDEGLNSPDITTLQTLLVLGI 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,349
Number of Sequences: 5004
Number of extensions: 37836
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -