Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_J23
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    91   5e-19
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    86   2e-17
04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577     31   0.75 
03_05_0161 + 21400580-21401695                                         30   1.3  
04_04_0387 + 24869594-24871480                                         27   7.0  
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    27   9.2  
01_04_0054 - 15456668-15459691                                         27   9.2  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 51/126 (40%), Positives = 70/126 (55%)
 Frame = +1

Query: 79  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 258
           GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++       
Sbjct: 10  GRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPK 67

Query: 259 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 438
              + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       
Sbjct: 68  KTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAK 127

Query: 439 LKVKAA 456
           LK  AA
Sbjct: 128 LKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 45/109 (41%), Positives = 64/109 (58%)
 Frame = +1

Query: 79  GRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAP 258
           GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  ++       
Sbjct: 23  GRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDIKIDIKRVPK 80

Query: 259 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 405
              + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 81  KTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_04_1540 - 34245246-34245797,34246904-34247157,34247989-34248577
          Length = 464

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = +3

Query: 24  LLLRRCKNVMPFARYVEPGXCRPGSRRSLKGKVSERGRRY*PNSCTG*WTRQWST*ATD- 200
           LLLR     +PF+R  +     P  RR L+  V+E  R    N   G     WS  A D 
Sbjct: 20  LLLRPASPPLPFSR--QQAASGPDRRRLLRVYVAELPRAL--NH--GLLDLYWSLPAADS 73

Query: 201 --PLKPTPSHKIPPQIRVHSPY 260
             P    P H  P   R HSPY
Sbjct: 74  RIPASSDPDHPPPRPPRAHSPY 95


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 215 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 120
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +1

Query: 298 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 477
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 478 K 480
           K
Sbjct: 557 K 557


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -1

Query: 524 AFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 357
           A+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 324 AYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 142 IDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA--PTRLVRKAWTDAKL 297
           +DQ  AL D    G+PR   R+ ++  T FR+++ +            WTD +L
Sbjct: 513 VDQIWALYDDR-DGMPRYYARIRRIDTTNFRVQFTWLEHDAKNEEEDKWTDEEL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,263
Number of Sequences: 37544
Number of extensions: 290110
Number of successful extensions: 869
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)