Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J18
(655 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 234 2e-61
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 234 2e-61
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 234 2e-61
AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and polyadeny... 234 2e-61
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 234 2e-61
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 234 2e-61
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 234 2e-61
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 234 2e-61
AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens ... 234 2e-61
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 231 2e-60
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 218 1e-56
BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein. 109 1e-23
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 109 1e-23
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 109 1e-23
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 109 1e-23
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 109 1e-23
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 109 1e-23
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 83 8e-16
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 83 8e-16
BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subu... 47 7e-05
AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens ... 47 7e-05
BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and polyadenyl... 45 2e-04
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 121 FTSQMIK 127
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 121 FTSQMIK 127
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 121 FTSQMIK 127
>AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 308
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 20 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 79
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 80 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 139
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 140 FTSQMIK 146
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 8 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 67
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 68 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 127
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 128 FTSQMIK 134
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 13 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 72
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 73 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 132
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 133 FTSQMIK 139
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 28 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 87
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 88 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 147
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 148 FTSQMIK 154
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 21 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 80
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 81 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 140
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 141 FTSQMIK 147
>AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 278
Score = 234 bits (572), Expect = 2e-61
Identities = 99/127 (77%), Positives = 116/127 (91%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 121 FTSQMIK 127
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 231 bits (564), Expect = 2e-60
Identities = 98/127 (77%), Positives = 115/127 (90%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQ 448
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 449 IDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNF 628
+DCVIISHFHLDHCGALPY SEM+GY GPIYMTH T+AI PILLED RK+AV++KGE+NF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANF 120
Query: 629 FTSQMIK 649
FTSQMIK
Sbjct: 121 FTSQMIK 127
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 218 bits (533), Expect = 1e-56
Identities = 93/118 (78%), Positives = 107/118 (90%)
Frame = +2
Query: 296 GAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISHF 475
GAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+RRFPDFSYI G +T +DCVIISHF
Sbjct: 77 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 136
Query: 476 HLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQMIK 649
HLDHCGALPY SEM+GY GPIYMTHPT+AI PILLED RK+AV++KGE+NFFTSQMIK
Sbjct: 137 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK 194
>BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein.
Length = 554
Score = 109 bits (261), Expect = 1e-23
Identities = 54/106 (50%), Positives = 67/106 (63%)
Frame = +2
Query: 284 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 463
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 464 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVA 601
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 114
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 109 bits (261), Expect = 1e-23
Identities = 54/106 (50%), Positives = 67/106 (63%)
Frame = +2
Query: 284 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 463
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 464 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVA 601
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 114
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 109 bits (261), Expect = 1e-23
Identities = 54/106 (50%), Positives = 67/106 (63%)
Frame = +2
Query: 284 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 463
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 464 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVA 601
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 114
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 109 bits (261), Expect = 1e-23
Identities = 54/106 (50%), Positives = 67/106 (63%)
Frame = +2
Query: 284 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 463
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 464 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVA 601
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 114
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 109 bits (261), Expect = 1e-23
Identities = 54/106 (50%), Positives = 67/106 (63%)
Frame = +2
Query: 284 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 463
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 464 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVA 601
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 114
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 109 bits (261), Expect = 1e-23
Identities = 54/106 (50%), Positives = 67/106 (63%)
Frame = +2
Query: 284 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVI 463
I PLGAGQ+VGRSCI+L G+ IMLDCG+H G P I P ++ID ++
Sbjct: 14 IRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP-----AEIDLLL 68
Query: 464 ISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDMRKVA 601
ISHFHLDHCGALP+ + + G +MTH TKAI LL D KV+
Sbjct: 69 ISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 114
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 83.0 bits (196), Expect = 8e-16
Identities = 32/42 (76%), Positives = 41/42 (97%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDE 394
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+
Sbjct: 16 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDD 57
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 83.0 bits (196), Expect = 8e-16
Identities = 32/42 (76%), Positives = 41/42 (97%)
Frame = +2
Query: 269 MPDIKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDE 394
MP+I++TPLGAGQDVGRSCIL+++ GKN+MLDCGMHMG+ND+
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDD 42
>BC025267-1|AAH25267.1| 658|Homo sapiens integrator complex subunit
9 protein.
Length = 658
Score = 46.8 bits (106), Expect = 7e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +2
Query: 404 PDFSYIVPEGPITSQIDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLE 583
P+F E S +D ++IS++H ALPY++E G+TG +Y T PT I +L+E
Sbjct: 81 PEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLME 138
Query: 584 DM 589
++
Sbjct: 139 EL 140
>AK001733-1|BAA91867.1| 658|Homo sapiens protein ( Homo sapiens
cDNA FLJ10871 fis, clone NT2RP4001696, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 658
Score = 46.8 bits (106), Expect = 7e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +2
Query: 404 PDFSYIVPEGPITSQIDCVIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLE 583
P+F E S +D ++IS++H ALPY++E G+TG +Y T PT I +L+E
Sbjct: 81 PEFCLPETELIDLSTVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLME 138
Query: 584 DM 589
++
Sbjct: 139 EL 140
>BC070095-1|AAH70095.1| 782|Homo sapiens cleavage and
polyadenylation specific factor 2, 100kDa protein.
Length = 782
Score = 45.2 bits (102), Expect = 2e-04
Identities = 33/104 (31%), Positives = 46/104 (44%)
Frame = +2
Query: 278 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 457
IK+T L Q+ C LL + +LDCG DE D + + QID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGW-----DEHFSMDIIDSLRKH--VHQIDA 57
Query: 458 VIISHFHLDHCGALPYMSEMIGYTGPIYMTHPTKAIAPILLEDM 589
V++SH H GALPY +G IY T P + + + D+
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDL 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,994,840
Number of Sequences: 237096
Number of extensions: 2186699
Number of successful extensions: 3442
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3435
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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