Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J15
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 259 8e-70
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 251 2e-67
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 237 4e-63
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 31 0.55
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 3.9
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.2
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 6.8
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 6.8
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 27 9.0
10_08_1022 + 22337332-22339398 27 9.0
09_06_0319 - 22293869-22293906,22294539-22295808 27 9.0
03_04_0088 + 17209568-17209876,17209966-17210595,17210846-172110... 27 9.0
02_03_0106 + 15292869-15296138 27 9.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 259 bits (635), Expect = 8e-70
Identities = 118/160 (73%), Positives = 133/160 (83%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 218
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
SSEALEA RI CNKY+ KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 399 QPQGTVARVRIGQPIMSVRSTDRWXAQVIEALRRAKFNFP 518
+PQGT ARV IGQ ++SVR + EALRRAKF FP
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFP 160
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 251 bits (615), Expect = 2e-67
Identities = 114/156 (73%), Positives = 129/156 (82%)
Frame = +3
Query: 51 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 230
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 231 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGQPQG 410
LEA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFG+P G
Sbjct: 372 LEAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTG 431
Query: 411 TVARVRIGQPIMSVRSTDRWXAQVIEALRRAKFNFP 518
T ARVRIGQ ++SVR D A EALRRAKF FP
Sbjct: 432 TCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFP 467
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 237 bits (580), Expect = 4e-63
Identities = 108/153 (70%), Positives = 124/153 (81%)
Frame = +3
Query: 60 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 239
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 240 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGQPQGTVA 419
RI CNKY+ K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG+PQGT A
Sbjct: 64 ARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCA 123
Query: 420 RVRIGQPIMSVRSTDRWXAQVIEALRRAKFNFP 518
RV IGQ ++SVR EALRRAKF FP
Sbjct: 124 RVDIGQVLLSVRCKPNNAVHASEALRRAKFKFP 156
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 162 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 281
T D P C +HL SD Y S E ++AG+ C L K G
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 442 MGCPMRTRATVP*GWPNAPRIPVWSLSAPAH 350
+ CP+ + + VP P++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 396 GQPQGTVARVRIGQPIMSVRSTD 464
G PQ T+ R+ +G P +S++S D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 268 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 167
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 180 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 64
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +3
Query: 351 CAGADRLQTGMRGAFGQPQG---TVARVRIG 434
C+GA + + RG GQP+G V+R+R G
Sbjct: 52 CSGATKPECYARGVMGQPRGRLPAVSRIRRG 82
>10_08_1022 + 22337332-22339398
Length = 688
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 146 QIEDTDLGIRYTPTEPRFRIRFIFAVPVASRWPAPHGDLYKVTP 15
++ TD+ + + PR R F + AS WP PH D P
Sbjct: 216 ELGSTDVIFQTGDSIPRIRALFNLSAAAASSWP-PHPDAASADP 258
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 396 GQPQGTVARVRIGQPIMSVRSTD 464
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>03_04_0088 +
17209568-17209876,17209966-17210595,17210846-17211019,
17211434-17211515,17212091-17212278,17212993-17213152,
17213441-17213763,17213860-17213967,17214116-17214189,
17214249-17214361,17214461-17214741
Length = 813
Score = 27.1 bits (57), Expect = 9.0
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 279 GKDQFHIRMRLHPFHVIRINKMLS--CAGADRLQTGMRGAFGQPQGTVARVRIGQP 440
GK + IR+R IR K+LS A A+ +G G QP+G+ R + G+P
Sbjct: 206 GKLPYDIRLRAPE---IRKKKLLSFQAAVAESFGSGSSGGSKQPKGSSLRSKDGRP 258
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 307 LMRIWN*SFPQFFTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKI 134
L+ W+ +FP++ LL + R EL CS S C GK+ ++ +P+ +I
Sbjct: 1008 LIIFWSIAFPRWLE--LLIRKRDGLCHFELQCSLSLLRSCLDGGKNWSIVQQIPEVRI 1063
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,968
Number of Sequences: 37544
Number of extensions: 375544
Number of successful extensions: 1064
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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