Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_J14
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   106   2e-24
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   106   2e-24
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   4.6  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   4.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    24   8.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   8.0  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  106 bits (254), Expect = 2e-24
 Identities = 53/104 (50%), Positives = 63/104 (60%)
 Frame = +1

Query: 55  MGAYRYXQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
           MGAY+Y +EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEE 366
                              TYGKP   GVN LK  R+ +  AEE
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEE 104


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  106 bits (254), Expect = 2e-24
 Identities = 53/104 (50%), Positives = 63/104 (60%)
 Frame = +1

Query: 55  MGAYRYXQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
           MGAY+Y +EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEE 366
                              TYGKP   GVN LK  R+ +  AEE
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEE 104


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 121 LRVRVWQYRQLTRMHRAPRPTRPD 192
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 354 GLKVARGLQLVDTMALGLAISGTLSNW 274
           GL VA G Q  DT+ LG+ I   +S++
Sbjct: 93  GLTVALGPQFPDTLVLGMEIRMQVSDY 119


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -2

Query: 143 YCHTLTRNKK---RITSLSFFLYNSXIYL 66
           YCH L RN+K    I S+S    N  +YL
Sbjct: 473 YCHYLDRNRKPPLNIKSVSESFKNFWVYL 501


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 41  HRLLRWVPTDIXRSCIGKN*AMLCVFCCV*GYGSTV 148
           H LL W+PT +  S       M C FC    Y +++
Sbjct: 699 HPLLTWIPTPLESS------VMACAFCKTFAYLASI 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,297
Number of Sequences: 5004
Number of extensions: 32432
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)