Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J14
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 109 6e-25
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 107 3e-24
05_02_0037 + 5883285-5884292 31 0.27
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.36
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 4.4
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 5.8
10_08_0147 + 15218150-15218401,15218569-15218643,15219099-152192... 27 7.7
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 27 7.7
03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865 27 7.7
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 109 bits (263), Expect = 6e-25
Identities = 54/104 (51%), Positives = 64/104 (61%)
Frame = +1
Query: 55 MGAYRYXQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 234
MGAY+Y EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 235 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEE 366
YGKPK G+ QLK RN +S+AEE
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEE 104
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 107 bits (258), Expect = 3e-24
Identities = 53/103 (51%), Positives = 63/103 (61%)
Frame = +1
Query: 58 GAYRYXQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 237
GAY+Y EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 238 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEE 366
YGKPK G+ QLK RN +S+AEE
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEE 209
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.27
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 138 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 290
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 366 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 238
+++ G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 261 WPQASSC*G-CHLWQAQEPWCQPVEAH 338
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 148 QLTRMHRAPRPTRPD 192
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
>10_08_0147 +
15218150-15218401,15218569-15218643,15219099-15219208,
15219299-15219560
Length = 232
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 179 PQGRTKPED*ATVLNKVMLYSESVCDVVA 265
P G +P A +V+LY E +C+ VA
Sbjct: 199 PPGLPRPVSKAASSTRVLLYEEELCEAVA 227
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 26.6 bits (56), Expect = 7.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 186 PCGPGSAVHTSQLTVLPYPH 127
PC P S + +S + ++P PH
Sbjct: 989 PCSPKSLIESSPVKIVPLPH 1008
>03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865
Length = 648
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 61 AYRYXQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKAR 201
A Y + + +DV R+ RVR Q R L APRP P R
Sbjct: 417 AVPYPTYFHPRSDADVFRWQDRVRGMQRRWLMAFVGAPRPDDPKNIR 463
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,991,225
Number of Sequences: 37544
Number of extensions: 252578
Number of successful extensions: 559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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