Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J09
(450 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 57 1e-09
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 29 0.33
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 27 1.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 4.1
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 7.1
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 7.1
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 7.1
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 24 9.4
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 24 9.4
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 57.2 bits (132), Expect = 1e-09
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Frame = +3
Query: 150 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 329
F++EP NV+ ++ R++GL + KAVGV N R + K +KPAK L R+ A
Sbjct: 30 FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88
Query: 330 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAIL 431
A R YK + + YR DL K ++ RASAIL
Sbjct: 89 NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAIL 124
Score = 27.1 bits (57), Expect = 1.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 65 VKMSSSLNWMIIRNNNAFLXEEAQY 139
+ +S+ L W +IR+NN FL + ++
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEF 25
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 269 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFD 138
+HYC S + LHDT LV G + S +++ + D
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMID 294
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 43 PNTTCSQCVRRQK 5
PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 226 PTAFL*IKPLYLKEWRLVTLFGSLL--NGFLILRFFXKECIVVADDH 92
PT+F IKPL + +R+ L+ LL + +L E +V+ DH
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLHCSNMSLLSDPNGEAMVMQRDH 393
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +3
Query: 75 RRH*TG*SSATTMHSLXKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKA 221
RRH +++ + S K+ K+P P + L + G H+KA
Sbjct: 277 RRHKRSRHNSSNLASTPKRNGYKQPLQITPLPIRMLSLEEFQGSPHRKA 325
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 87 FSDDDIFTGLNLFLHQTQRAHNVCVD 10
+ DD F +N +H T + N+C D
Sbjct: 322 YQDDKSFPKVNADIHMTSKYINICRD 347
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 209 SQESRWCRGEP*QEGIHSSVQESKGY 286
S +S W +P + IHSSVQE++G+
Sbjct: 2 SNKSAW---QPQFDEIHSSVQEAEGF 24
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 279 LLSCTLL*IPSCQGSP 232
LL C+++ I SCQG P
Sbjct: 542 LLICSIIDISSCQGDP 557
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 135 NIKKPFSKEPNNVTNLHSFRYNGLI 209
N+KK ++ N+T HS+ NG I
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTI 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,270
Number of Sequences: 5004
Number of extensions: 34656
Number of successful extensions: 103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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