Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_J07
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    79   5e-16
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    76   3e-15
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.1  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 41/103 (39%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +1

Query: 172 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYXXXXXXX 348
           P  G RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY       
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVR 61

Query: 349 XXXXXXXXXXXLRAIWGKVTRPHGNSGSVRAKFKSNLPAQXMG 477
                      +R IWG + RPHGNSG+VRA+F  NLPA+  G
Sbjct: 62  GSK--------IRVIWGTIARPHGNSGAVRARFVHNLPAKTFG 96


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 75.8 bits (178), Expect = 3e-15
 Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
 Frame = +1

Query: 172 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYXXXXXXX 348
           P  G RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY       
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVR 61

Query: 349 XXXXXXXXXXXLRAIWGKVTRPHGNSGSVRAKFKSNLPAQXMG 477
                      +R IWG V+RPHGNSG VRA+F  NLP +  G
Sbjct: 62  GSK--------IRVIWGTVSRPHGNSGVVRARFTHNLPPKTFG 96


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 405 HLAPDSTQLGFFATGTSGNWCPXXSSVHIDAMLAS 301
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,965
Number of Sequences: 5004
Number of extensions: 29491
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)