Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J07
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 98 4e-21
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 96 2e-20
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 95 2e-20
09_02_0445 + 9446171-9447496 29 1.5
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 29 2.0
12_01_0899 - 8689125-8689383,8689540-8689826 29 2.6
09_04_0201 + 15543318-15543488,15543956-15544069 28 3.4
04_04_1576 - 34551095-34552645 27 6.0
09_04_0587 + 18782870-18783828,18784084-18784265,18785283-187856... 27 7.9
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 7.9
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 97.9 bits (233), Expect = 4e-21
Identities = 49/106 (46%), Positives = 61/106 (57%)
Frame = +1
Query: 160 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYXXXX 339
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 340 XXXXXXXXXXXXXXLRAIWGKVTRPHGNSGSVRAKFKSNLPAQXMG 477
+R IWGKVTRPHGNSG VRAKF+SNLP MG
Sbjct: 62 KSNDST--------IRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMG 99
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 95.9 bits (228), Expect = 2e-20
Identities = 47/98 (47%), Positives = 56/98 (57%)
Frame = +1
Query: 184 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYXXXXXXXXXXXX 363
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKSGGTNY- 69
Query: 364 XXXXXXLRAIWGKVTRPHGNSGSVRAKFKSNLPAQXMG 477
R IWGKVTRPHGNSG VRAKFKSNLP MG
Sbjct: 70 -------RCIWGKVTRPHGNSGVVRAKFKSNLPPASMG 100
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 95.5 bits (227), Expect = 2e-20
Identities = 48/105 (45%), Positives = 60/105 (57%)
Frame = +1
Query: 160 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYXXXX 339
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVY---- 57
Query: 340 XXXXXXXXXXXXXXLRAIWGKVTRPHGNSGSVRAKFKSNLPAQXM 474
+R IWGKVTRPHGNSG VRAKF+SNLP M
Sbjct: 58 ----KAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
>09_02_0445 + 9446171-9447496
Length = 441
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -2
Query: 435 DTARVAMWAGHLAPDSTQLGFFATGTSGNWCPXXSSVHIDAMLASIKDCIITVFCS--FN 262
+T W GH P + F++G G W S ++ + + + CS +
Sbjct: 220 ETPYCGYWHGHGTPPRPRAYVFSSGVDGGWRESDSGSDVELPSLELINFVGRAGCSLYWG 279
Query: 261 LEESGVLVLVA*TTLISCEYGLCVQPAVAG 172
L+ ++ + TT E+ L PA+ G
Sbjct: 280 LDGKDAMLALHKTT---AEFSLVTIPAIVG 306
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 371 LPRGPPGIGVLXLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 219
+P+ PPG LA + Q L R+FA T A SC +RR R
Sbjct: 87 VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 431 LPELPCGRVTLPQIARSLVFLPRGPP 354
LPE PC R+ LP+ + LP PP
Sbjct: 35 LPEPPCARLLLPEPPWGMAALPPEPP 60
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 413 GRVTLPQIARSLVFLPRGPPGIGVLXL 333
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 331 LCTHRRNACQHKRLHHYGLLLL 266
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
>09_04_0587 +
18782870-18783828,18784084-18784265,18785283-18785629,
18786497-18786739
Length = 576
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 266 KEQKTVMMQSFMLASIASMCTELXXGHQFPEVPVAKKPSCVLSGAR*PAHMAT 424
+E + + + F ASI C EL G + ++PV VL G R MAT
Sbjct: 203 REIRGLPLDGFDYASILGQCCELPVG--YVQLPVGVAGPLVLDGERFYVPMAT 253
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 293 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 159
T +L S+ P + R F+ W+R V +++PW G L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,393,298
Number of Sequences: 37544
Number of extensions: 246405
Number of successful extensions: 600
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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