Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_J07
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...   118   2e-27
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    28   3.1  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    28   3.1  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score =  118 bits (285), Expect = 2e-27
 Identities = 57/109 (52%), Positives = 71/109 (65%)
 Frame = +1

Query: 151 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYX 330
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+Y 
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLY- 64

Query: 331 XXXXXXXXXXXXXXXXXLRAIWGKVTRPHGNSGSVRAKFKSNLPAQXMG 477
                             RAIWGK+TRPHGN+G+VRAKF  N+P   +G
Sbjct: 65  -KAHNKTLKTGHTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALG 112


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 453 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPXXSSV-HIDAMLASI 298
           ++ L   T   + W GHLA ++ Q+   A  +  NW     +    DA+LA +
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 891


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 453  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPXXSSV-HIDAMLASI 298
            ++ L   T   + W GHLA ++ Q+   A  +  NW     +    DA+LA +
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARL 1002


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 25/82 (30%), Positives = 33/82 (40%)
 Frame = +2

Query: 164 HQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELXXG 343
           H SP+T+  T    S   S   +TST TP +   +   T    S   +S  +  T     
Sbjct: 94  HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTT---RSSTTTTATSTPTSSSKATTTSAQIT 150

Query: 344 HQFPEVPVAKKPSCVLSGAR*P 409
              PE+P A  P  VL G   P
Sbjct: 151 Q--PEIPQA-APGTVLKGEEFP 169


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 321 IDAMLASIKDCIITVFCSFNLEESGVLVL 235
           IDAM+    D +++V  S  LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,866
Number of Sequences: 27780
Number of extensions: 183958
Number of successful extensions: 406
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)