Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J06
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 32 0.41
U58752-6|AAB00668.1| 308|Caenorhabditis elegans C-type lectin p... 31 0.94
AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical ... 29 2.2
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 2.9
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 3.8
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 3.8
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 3.8
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 3.8
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z67738-1|CAA91545.2| 352|Caenorhabditis elegans Hypothetical pr... 28 5.0
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 5.0
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 6.7
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 6.7
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 8.8
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 8.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.8
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = -2
Query: 299 CSCQDDYAGRCCSK------EGTNRQGHKGVCSCDQTKTCGC 192
CSC +DY G CSK E + + G+C TKTC C
Sbjct: 906 CSCFEDYGGSDCSKCVGDSCEACDFDCNHGICE-PLTKTCSC 946
>U58752-6|AAB00668.1| 308|Caenorhabditis elegans C-type lectin
protein 51 protein.
Length = 308
Score = 30.7 bits (66), Expect = 0.94
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 163 TPRTNTTSCSQ--PHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPD 306
T + TT+C+ P + +S TP CP +PS H P+ +W + D
Sbjct: 131 TAKWQTTNCTAQLPFICSYSSSVTPTCPSVTIPS---HCPSGYTWYDETD 177
>AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical
protein C38C3.6 protein.
Length = 135
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 359 AAVPSPAPGYSEALTCRHKNIMTSFSQELGECYS 460
A V AP Y EA+TCR NI +L Y+
Sbjct: 52 APVNEEAPPYGEAVTCRTDNIFAITEPDLSRYYN 85
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -2
Query: 341 GWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQ 210
G+ C+S++ S C+ +G C + G+K +C +Q
Sbjct: 51 GFTGNDCKSELGSACATSPCRSGATCESVDNSTAGYKCICKWNQ 94
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 347 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 171
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 170 LGVIHCFFICYP 135
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 347 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 171
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 170 LGVIHCFFICYP 135
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 347 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 171
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 170 LGVIHCFFICYP 135
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 347 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 171
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 170 LGVIHCFFICYP 135
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -2
Query: 332 ATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQT----KTCGCEQEV 180
AT+ R D C C C + T Q + CSC T K+C C Q V
Sbjct: 19 ATTIR-DKRQSCGCAPRVQPSCSCQRTTYTQPQQYSCSCQNTAPVQKSCSCAQPV 72
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -2
Query: 332 ATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQT----KTCGCEQEV 180
AT+ R D C C C + T Q + CSC T K+C C Q V
Sbjct: 19 ATTIR-DKRQSCGCAPRVQPSCSCQRTTYTQPQQYSCSCQNTAPVQKSCSCAQPV 72
>Z67738-1|CAA91545.2| 352|Caenorhabditis elegans Hypothetical
protein W03G11.2 protein.
Length = 352
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 293 KSIQIRHHFDTMSHPIRSLNVNAAVPSPAPGYSE 394
K I IRH +D ++ +N+ +PSP Y E
Sbjct: 71 KVILIRHRYDNVAEGYIDINITRFIPSPVYFYYE 104
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = -2
Query: 338 WGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGH----KGVCSCDQT-KTCGCE 189
+G ++D C+C D Y+G C + N H +G C + C CE
Sbjct: 1302 FGQCMQKTDTFFECNCMDGYSGELCEQRDVNECNHYDCNRGHCVMTVSGPACQCE 1356
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/64 (21%), Positives = 22/64 (34%)
Frame = -2
Query: 332 ATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHC 153
A+S R + C C C ++ + + CSC + C C + L C
Sbjct: 17 ASSIRETRQASCGCAQSVQPTCSCQQASQQYS----CSCQPSTPCSCASSQQYQLQTSQC 72
Query: 152 FFIC 141
C
Sbjct: 73 MPAC 76
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 371 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 258
+G ++ G G +T C +D C C D GR C +
Sbjct: 1841 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1876
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 371 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 258
+G ++ G G +T C +D C C D GR C +
Sbjct: 1841 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1876
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 371 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 258
+G ++ G G +T C +D C C D GR C +
Sbjct: 1860 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1895
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 265 QHLPA*SSWQEHPDQTSLRHDV-APHPIPERKRS-RPESSTWLLRSV 399
Q LP+ +S Q +PDQ H + P I R R P+ ST L SV
Sbjct: 341 QPLPSQASVQVYPDQRRNNHSIYQPPSISARLRDLSPDDSTEALNSV 387
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 341 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 258
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 341 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 258
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 332 ATSCRSDV*SG-CSCQDDYAGRCCSK---EGTNRQGHKGVCSCDQTKTC 198
A S D SG C C YAG C++ +GT + C C + C
Sbjct: 1260 ANSKSCDHISGRCQCPKGYAGHSCTELCPDGTFGESCSQKCDCGENSMC 1308
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 332 ATSCRSDV*SG-CSCQDDYAGRCCSK---EGTNRQGHKGVCSCDQTKTC 198
A S D SG C C YAG C++ +GT + C C + C
Sbjct: 1260 ANSKSCDHISGRCQCPKGYAGHSCTELCPDGTFGESCSQKCDCGENSMC 1308
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 341 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 258
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 341 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 258
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,910,343
Number of Sequences: 27780
Number of extensions: 329461
Number of successful extensions: 1006
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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