Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_J03
(404 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 117 4e-27
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 74 5e-14
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 72 1e-13
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 61 3e-10
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 57 4e-09
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 57 6e-09
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 54 5e-08
Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical pr... 29 1.3
U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical pr... 28 2.2
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 5.1
Z66516-4|CAA91359.2| 500|Caenorhabditis elegans Hypothetical pr... 27 6.8
U64609-4|AAB04601.3| 336|Caenorhabditis elegans Serpentine rece... 27 6.8
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 27 6.8
AL021469-3|CAA16290.2| 435|Caenorhabditis elegans Hypothetical ... 27 6.8
AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical ... 27 6.8
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 26 9.0
AL033514-13|CAA22100.1| 721|Caenorhabditis elegans Hypothetical... 26 9.0
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 117 bits (281), Expect = 4e-27
Identities = 53/80 (66%), Positives = 69/80 (86%)
Frame = +2
Query: 149 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKXYE 328
MSSIGTGYDL+AS FSPDGR+FQVEYA KAV+N+GT+I +RGK+GVV +KLI+SK Y
Sbjct: 1 MSSIGTGYDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYT 60
Query: 329 PAANKRIFHIDEHVGMAVAG 388
AN R+F+++++VG+AVAG
Sbjct: 61 DNANPRMFNVNDNVGVAVAG 80
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 73.7 bits (173), Expect = 5e-14
Identities = 34/76 (44%), Positives = 51/76 (67%)
Frame = +2
Query: 170 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKXYEPAANKRI 349
YD + FSP+GR+FQVEYA +AV+ T IG++ +GV+ A EK TSK A ++I
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKI 67
Query: 350 FHIDEHVGMAVAGLLS 397
+D+H+G+ AGL++
Sbjct: 68 SKVDQHIGVTFAGLIA 83
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 72.1 bits (169), Expect = 1e-13
Identities = 35/78 (44%), Positives = 49/78 (62%)
Frame = +2
Query: 170 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKXYEPAANKRI 349
YD + + FSPDG +FQVEYA +AV+ T +G+RGKD +V VEK + ++I
Sbjct: 4 YDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKI 63
Query: 350 FHIDEHVGMAVAGLLSXA 403
ID+HV +A AGL + A
Sbjct: 64 HMIDDHVMLAFAGLSADA 81
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 61.3 bits (142), Expect = 3e-10
Identities = 25/79 (31%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 170 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKXYEPAA-NKR 346
YD + FSP+GR++QVEYA +A+ ++GT +G+ +G+V A E+ K + + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEK 64
Query: 347 IFHIDEHVGMAVAGLLSXA 403
++ + +++ VAG+ + A
Sbjct: 65 VYRLSDNISCTVAGITADA 83
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 57.2 bits (132), Expect = 4e-09
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +2
Query: 167 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKXYEPAANK 343
G+D + FSP+GRV+QVEYA KA+ ++ T + ++G D V AV+K +
Sbjct: 8 GFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT 67
Query: 344 RIFHIDEHVGMAVAGLLSXA 403
++ I + VG G++ A
Sbjct: 68 SVYQISQSVGCCAIGMIPDA 87
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 56.8 bits (131), Expect = 6e-09
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = +2
Query: 158 IGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKXYEPAA 337
+G Y S + FSP G++ Q+EYA AV+N +GLR KDGVV A E + + +
Sbjct: 1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATENVGSVLTDD--- 57
Query: 338 NKRIFHIDEHVGMAVAGL 391
++ I +H+G +G+
Sbjct: 58 QPKVEQISKHIGCVYSGM 75
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 53.6 bits (123), Expect = 5e-08
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +2
Query: 170 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKXYEPAANKRI 349
YD + +SP GR+ QVEYA +A++ +G++ + V K + + K++
Sbjct: 6 YDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDL--SSHQKKV 63
Query: 350 FHIDEHVGMAVAGLLS 397
+ ID H G+++AGLLS
Sbjct: 64 YEIDTHAGVSIAGLLS 79
>Z68318-3|CAD57704.1| 337|Caenorhabditis elegans Hypothetical
protein T21B10.2b protein.
Length = 337
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 125 KYIKQCVNMSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIG 265
KYI + I G D++AS+F DG+ + +++ A ++S + G
Sbjct: 132 KYIAELAGTGKISIGMDVAASEFFKDGK-YDLDFKNPASDSSKWLSG 177
>U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical
protein R02F2.8 protein.
Length = 494
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 387 PATAMPTCSSIWNILLFAAGSYXLDVI--NFSTANTTPSFPR-RPITVPEFSTAFAAYST 217
PAT +P+ W LF+AGS VI A+ P + P P AF A+ T
Sbjct: 163 PATMLPSPMHFWQAALFSAGSSTCAVILVVVGLAHDAPVCAQDAPHEEPNLLKAFMAFGT 222
Query: 216 W 214
+
Sbjct: 223 F 223
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 214 PSGICCKGCRKFWNSNWPPRKRRGG 288
P + C GC+K S++ R+ R G
Sbjct: 1535 PPNLTCSGCKKILGSDYSLRRHRAG 1559
>Z66516-4|CAA91359.2| 500|Caenorhabditis elegans Hypothetical
protein W03C9.6 protein.
Length = 500
Score = 26.6 bits (56), Expect = 6.8
Identities = 20/78 (25%), Positives = 32/78 (41%)
Frame = -2
Query: 364 FINMEYPLVCGRFIXFGCD*LLNSKYHPVFSSEANYCSRIFYSLCSIFHLENATIRRKLR 185
F + + PL+ GRFI FG L +F S Y + Y L + + +R +
Sbjct: 110 FQSFQIPLIAGRFIAFGA--CLLYLCVEMFGSGRRYVMALCYILFGVASSSSTILRAYVA 167
Query: 184 SR*VIASSDRTHVYALFN 131
+ + DR Y+ N
Sbjct: 168 A--ISRHEDRPQAYSGLN 183
>U64609-4|AAB04601.3| 336|Caenorhabditis elegans Serpentine
receptor, class m protein2 protein.
Length = 336
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 62 LFGTIIYIFGPTLVYLSW*KSKYI 133
+F ++ + PTLVY+S KS YI
Sbjct: 60 IFSMVVVVTSPTLVYVSKMKSLYI 83
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 26.6 bits (56), Expect = 6.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 34 CQIVINSNTAFRNNNLYFWTNI 99
C I+ S+ F + NLY++TN+
Sbjct: 91 CAILFQSSQCFFDGNLYYYTNL 112
>AL021469-3|CAA16290.2| 435|Caenorhabditis elegans Hypothetical
protein Y116A8B.5 protein.
Length = 435
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 257 VIGLRGKDGVVFAVEKLITSKXYEPAANKRIFHIDEHVGMAVAGL 391
+IG G V+ + ++TS A KR+ HV + V GL
Sbjct: 40 IIGTVGNGTVILMIINILTSMKRNVQAGKRMMSSTNHVFIYVLGL 84
>AF100659-8|AAC68966.1| 688|Caenorhabditis elegans Hypothetical
protein F58E2.3 protein.
Length = 688
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -3
Query: 366 CSSIWNILLFAAGSYXLDVINFSTANTTPSFPRRPITVPEFSTAF 232
C+SI N+L F ++ +DVI+ T+ F+ +F
Sbjct: 198 CTSIENVLHFQGANFKVDVISIDDLQLMKELSTHSATLKYFNISF 242
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 110 SW*KSKYIKQCVNMSSIGTGYDLSASQFSPDGR 208
SW K++ + CV++SS+ TG +P R
Sbjct: 669 SWLKTENLDDCVDVSSLETGQTFQEMAINPLSR 701
>AL033514-13|CAA22100.1| 721|Caenorhabditis elegans Hypothetical
protein Y75B8A.12 protein.
Length = 721
Score = 26.2 bits (55), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 279 TGWYLLLRS*SHPNXMNLPQTRGYSILMNML 371
TGW L S P NLP +S+ M L
Sbjct: 313 TGWLFSLAKTSRPMIENLPVAANFSVKMQQL 343
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,388,679
Number of Sequences: 27780
Number of extensions: 194233
Number of successful extensions: 439
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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