Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_J03
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.0  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 232 KGCRKFWNSNWPPRKRR 282
           K C + W S +P R +R
Sbjct: 398 KNCCRSWLSKFPTRSKR 414


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 232 KGCRKFWNSNWPPRKRR 282
           K C + W S +P R +R
Sbjct: 398 KNCCRSWLSKFPTRSKR 414


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 46  INSNTAFRNNNLYFW 90
           I+SN   R NN Y W
Sbjct: 360 ISSNIYERQNNEYIW 374


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 71  TIIYIFGPTLVYLSW*KSKYIKQCVN 148
           ++  +FG TLV L+  + +Y+    N
Sbjct: 56  SVATVFGNTLVILAVVRERYLHTATN 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,141
Number of Sequences: 438
Number of extensions: 2509
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)