Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_I24
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    88   3e-19
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   0.89 
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   3.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   6.3  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    24   6.3  
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy...    24   6.3  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   8.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   8.3  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 87.8 bits (208), Expect = 3e-19
 Identities = 42/90 (46%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = +2

Query: 38  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 211
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 212 MPKLKAFQKIQIRLVRELEKKFSGKHVVFV 301
            P LKAF K Q RL RELEKKF+ +HV+F+
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFI 95


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 200 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 292
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 8   PPVKLSXMSTKIIKASGAEADSFETS 85
           PPV+ S  ST II       DSF +S
Sbjct: 23  PPVETSISSTNIIDLDAIPDDSFPSS 48


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 41  IIKASGAEADSFETSISQALVELETN 118
           I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 32  ISPSSGSELPNFKTTISQNNEEVKTS 57


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 41  IIKASGAEADSFETSISQALVEL--ETNSDLKAQLRELYITKAKEIEL 178
           I+  SG +     T  S    EL  +  S +K  L + Y+T A+++EL
Sbjct: 27  ILGISGPQGSGKSTLASALDTELTRKNESVVKFSLDDFYLTHAEQVEL 74


>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 271

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 23  SXMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELH 181
           S ++ K++ AS  E   F   + Q  + +  +   KA+   L     KE+ LH
Sbjct: 124 STLTAKLLVASFGETIPFSLPLGQLSINVPPSLYHKAEFSPLDELSPKEVILH 176


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 126  SKPNFGSFTLQKLKKLNYTIRS 191
            S P FGSFT + L  LN   R+
Sbjct: 1038 STPEFGSFTYRNLDFLNKANRN 1059


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 177  SSISLAFVM*SSRSWALRSELVSSSTSACEIEVSKESASAPLAL 46
            SSI+ A V  SS S    + +  SSTS+     + +S+++ +A+
Sbjct: 1002 SSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAV 1045


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,605
Number of Sequences: 5004
Number of extensions: 20549
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)