Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_I22
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   131   3e-32
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   131   3e-32
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    33   0.016
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    25   4.3  
SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase Met...    23   9.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   9.8  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  131 bits (317), Expect = 3e-32
 Identities = 59/77 (76%), Positives = 70/77 (90%)
 Frame = +3

Query: 111 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 290
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76

Query: 291 LRRLVRIGVLDEXQMKL 341
           +RRLVR+G+LDE +MKL
Sbjct: 77  IRRLVRLGILDESRMKL 93


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  131 bits (317), Expect = 3e-32
 Identities = 59/77 (76%), Positives = 70/77 (90%)
 Frame = +3

Query: 111 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 290
           RPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17  RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76

Query: 291 LRRLVRIGVLDEXQMKL 341
           +RRLVR+G+LDE +MKL
Sbjct: 77  IRRLVRLGILDETRMKL 93


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 32.7 bits (71), Expect = 0.016
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 138 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 317
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 318 L 320
           L
Sbjct: 88  L 88


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 50  AKMVNNRVPSVFSKTYVTPRSSF*K 124
           A +++N +PSV SK +  PR+ + K
Sbjct: 80  ASLLSNSLPSVKSKIFKVPRARYVK 104


>SPAC343.10 |met11|mthfr2|methylenetetrahydrofolate reductase
           Met11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 120 EKARLDQELKIIGEYGLRN 176
           +KA +D+ L+   EYG+RN
Sbjct: 88  DKAIIDKALETAKEYGIRN 106


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +3

Query: 72  YRRYFQRRT*HLXRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 251
           YRRY Q R  +  +      +D +  I+ E+    +R  WR   +     ++   + + +
Sbjct: 303 YRRYRQDRVENRIQTQVLRHVDVDPPIVEEHSSFFRRRRWRRSRSQESASRST--IRSTD 360

Query: 252 EKDPKRLFE 278
           E++P+R  E
Sbjct: 361 EREPERTSE 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,617
Number of Sequences: 5004
Number of extensions: 18814
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)