Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_I04
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    30   0.26 
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   3.2  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   4.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   5.7  
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    25   5.7  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    25   5.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   5.7  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.7  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    25   7.5  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   7.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.9  

>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 271 VLNSLSSDGGDM-IRDVNIERAKF*IWKAHVKTDVIIKYNAFTVLTCKNSLILKQI 435
           +L  L   GGD+ IRD + E   F   K  +  D+I +YNA T +   + LI  Q+
Sbjct: 52  LLKILVERGGDINIRDQDGETPLFVCEKLEIAHDLINQYNADTTVKNNDGLIAAQV 107


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 331 HALYLRHGSCLLHRYSMSSELKFLQSASIFQPTNVHSW 218
           H  Y+   +  +  +S+  EL +L+   +F P N  +W
Sbjct: 184 HRFYVLFETSKVVSWSLEEELNYLKDKILFAPDNQSAW 221


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 270 SNFYNPRLSFSPQMFTVGHRSPPSLATTSGPDCIQWLLATLNGSSVN 130
           SN+YNP  +  P +    +  PP + T + P     + A+ N  S++
Sbjct: 217 SNYYNPSATSKPAV----NVQPPRIPTKATPSAEPSMTASANAGSIS 259


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 254 RVYLSAHKCSQLDIGLPQASPQRAVLTASNGFSRPSTGRQST 129
           + +LSA +C QL   L QASP+   +   +  S     ++ T
Sbjct: 732 KAHLSADQCKQLANVLTQASPEAKTVLEQHRLSEMRKTKKQT 773


>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 167 NGFSRPSTGRQSTLWKAYPRYL 102
           + F RP T R++ LW A P Y+
Sbjct: 79  SAFYRPFTKRENGLWYANPYYM 100


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 110 VGRPSTRLTDDPLRVARSHWMQSGPLV 190
           V + ST L  DPL + R H +   PLV
Sbjct: 127 VAQMSTHLPSDPLELCRIHSVAWSPLV 153


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 259 QSASIFQPTNVHSWT*VSPKPRHNERS*LHPMASRDPQRVVSQP 128
           Q+A    P + +S   VS  P H  RS LHP+ S+  Q     P
Sbjct: 37  QTAYYASPLHANS---VSLPPSHLPRSTLHPLLSQQQQPAQQSP 77


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 329 RSIFTSRIMSPPSLLNEFRTQIFTIRVYLSA--HKCSQLDIGL 207
           + I   RI + PSL     T   T+++Y+ A  HK   L I L
Sbjct: 38  KKIIDERIQTDPSLKIYRTTHFDTLKIYVKAQQHKTQNLAINL 80


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 294 IATQ*VQNSNFYNPRLSFSPQMFTV 220
           IAT+ +Q   FY PRL   P++FTV
Sbjct: 20  IATRLLQ---FYQPRLQDEPEVFTV 41


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 173 ASNGFSRPSTGRQSTLWKAYP 111
           +S+ FSRP  G+Q  L  A+P
Sbjct: 198 SSSRFSRPQVGQQQPLSSAFP 218


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 355 VPSKFKT*HALYLRHGSCLLHRYSMSSELKFLQSASIFQPTNVHS 221
           +   F +   LYL     +L + +    L+FLQ+ S+    N++S
Sbjct: 212 ITETFPSLEVLYLEANEIILSKATSFKNLQFLQTLSLANNLNLYS 256


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -3

Query: 399 DSKRIILNDDVSFHVCLPNLKLSTLYIYVTDHVSSIATQ*VQNSNFYNPRLS 244
           D   I+ N  VSF+    +L  +T    +  H++S+      N+ F+   LS
Sbjct: 827 DESDIVKNTFVSFNTTSNSLGNTTALSQLKGHINSVIVDDSYNNIFFGGNLS 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,265
Number of Sequences: 5004
Number of extensions: 42496
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)