Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_H22
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 274 4e-75
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 274 6e-75
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 0.82
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 3.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 5.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.8
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 5.8
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 274 bits (673), Expect = 4e-75
Identities = 126/175 (72%), Positives = 143/175 (81%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 218
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 399 KPQGTVARVRIGQPIMSVRSXDRWXAQVIXALXRAQFKFPGTSKXLPIQEVGFHQ 563
KP G VARV IGQ +MSVR+ D A I AL R Q+KFPG + + ++ GF Q
Sbjct: 121 KPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 517 PERQXIYLSKKWGFTK 564
P +Q I +SKKWGF++
Sbjct: 160 PGQQRIIVSKKWGFSQ 175
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 274 bits (672), Expect = 6e-75
Identities = 126/175 (72%), Positives = 143/175 (81%)
Frame = +3
Query: 39 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 218
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 219 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 398
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 399 KPQGTVARVRIGQPIMSVRSXDRWXAQVIXALXRAQFKFPGTSKXLPIQEVGFHQ 563
KP G VARV IGQ +MSVR+ D A I AL R Q+KFPG + + ++ GF Q
Sbjct: 121 KPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 517 PERQXIYLSKKWGFTK 564
P +Q I +SKKWGF++
Sbjct: 160 PGQQRIIVSKKWGFSQ 175
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 63 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 239
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 240 G 242
G
Sbjct: 94 G 94
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 2.5
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 413 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 297
+T +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 141 DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 284
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 96 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 206
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 120 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 239
DPK+R+F KRA + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 282 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 386
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 106 VGVYLIPRSVSSIWV 150
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,148
Number of Sequences: 5004
Number of extensions: 53899
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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