Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_H21
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    31   0.18 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    27   2.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   3.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   3.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.2  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    25   9.0  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   9.0  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    25   9.0  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 98  KLHCFDVAFVNLQLNQQMLIVNSVRR 21
           K+HC +  F  LQ+NQ ++  NS  R
Sbjct: 268 KVHCLNTLFSKLQINQSIIFCNSTNR 293


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 342 LKRYPIPAIHPDLYDNILVS---ISAAARSNQIYVVVNGRELMDCTKNDTGE 488
           +  +  P ++  L  NI +S        + N I +V +GR+LM C +  +G+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGK 219


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 324  VPVYGSLKRYPIPAIHPDLYDN-ILVSISAAARSNQIYVVVNGREL 458
            VP +GS K    PA+   LYD  +LVSIS   +  ++Y+ ++  E+
Sbjct: 1388 VPRFGSFK---YPALK--LYDRGVLVSISHMPQKEKLYITISADEV 1428


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 435 VVVNGRELMDCTKNDTG 485
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 435 VVVNGRELMDCTKNDTG 485
           V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 321 VVPVYGSLKRYPIPAIHPDLYDNILVSI 404
           ++P++ S KR+     +P L+DN  V I
Sbjct: 139 IIPIFKSKKRFMTSHNNPSLHDNFSVRI 166


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 123 SLAKATSQKSTPEDSQ-YVAAVVEFIMSDDVEDNIRNYIHYIEEAAKQHADIIVFPEL 293
           ++   ++    P+D + +   +V+   + D  +N++     + EAAK  +++IV PE+
Sbjct: 27  NIMSVSASSLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEI 84


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 309 TTAFVVPVYGSLKRYPIPAIHPDLYDNILV 398
           T+   +PV   L +Y +  I PDLYD + V
Sbjct: 231 TSLLQIPV-SQLSQYSVIFIVPDLYDRVYV 259


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 210 VEDNIRNYIHYIEE--AAKQHADIIVFPELCLT 302
           V +NI +    +++   A Q   ++VFPE+CLT
Sbjct: 15  VNENIVHLRQLLDQHSEALQSVKLLVFPEMCLT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,308
Number of Sequences: 5004
Number of extensions: 46978
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)