Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_H21
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    33   0.22 
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    29   2.1  
X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.        28   4.8  
AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    27   8.4  

>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 104 KNKLHCFDVAFVNLQLNQQMLIVNSVRR 21
           K K+HC +  F  LQ+NQ ++  NS +R
Sbjct: 265 KQKVHCLNTLFRKLQINQSIIFCNSTQR 292


>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 342  LKRYPIPAIHPDLYDNILVSISAAARSNQIYVVVNGRELMDCTKN 476
            +++Y   ++H D+    ++ + A A+++ +YVV    E+  C  N
Sbjct: 2008 IQKYRAHSLHSDIGKKRILKLVADAKNDLVYVVTRQNEVWKCATN 2052


>X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +3

Query: 123 SLAKATSQKSTPE--DSQYVAAVVEFIMSDDVEDNI---RNYIHYIEEAAKQHADIIVFP 287
           +L   T  +S P+  + +   A  E I+ D ++  I   RN +H  E  + Q AD+++  
Sbjct: 307 NLPYITMDQSGPKHLNLKLTRAKFEQIVGDLIKRTIEPCRNVLHDAEVKSSQIADVLLVG 366

Query: 288 ELCLTNKTTAFVVPVYGSLKRYPIPAIHPD 377
            +    K  A V  ++G   + P  A++PD
Sbjct: 367 GMSRMPKVQATVQEIFG---KVPSKAVNPD 393


>AF016654-6|AAB66026.1|  426|Caenorhabditis elegans Hypothetical
           protein C17A2.2 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 400 QYRRLQEVIKSTLWSMAESSWTVLRMTPANLV 495
           ++R + EV+   +WS   S WT+       LV
Sbjct: 234 RHRHINEVVDCNIWSRGHSKWTIFADLDERLV 265


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 420 SNQIYVVVNGRELMDCTKNDTGEPCPELKE 509
           SNQ++V  +  E   C KN T + CP  KE
Sbjct: 48  SNQVFVPYSKIETDYCKKNLTDQRCPGTKE 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,112
Number of Sequences: 27780
Number of extensions: 261526
Number of successful extensions: 674
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)