Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_H20
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 149 1e-36
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 149 1e-36
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 133 4e-32
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 122 8e-29
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 2.3
11_06_0513 + 24466131-24469487 27 7.1
08_02_1245 - 25557201-25558199 27 7.1
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904... 26 9.4
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 26 9.4
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 149 bits (360), Expect = 1e-36
Identities = 70/104 (67%), Positives = 83/104 (79%)
Frame = +1
Query: 76 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 255
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 256 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSS 387
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 103
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 149 bits (360), Expect = 1e-36
Identities = 70/104 (67%), Positives = 83/104 (79%)
Frame = +1
Query: 76 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 255
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 256 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSS 387
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVST 103
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 133 bits (322), Expect = 4e-32
Identities = 62/96 (64%), Positives = 76/96 (79%)
Frame = +1
Query: 64 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 243
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 244 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 351
IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 122 bits (295), Expect = 8e-29
Identities = 53/72 (73%), Positives = 63/72 (87%)
Frame = +1
Query: 172 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 351
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 352 KYCAEIAHGVSS 387
YCAEIAH VS+
Sbjct: 159 TYCAEIAHNVST 170
Score = 29.9 bits (64), Expect = 0.76
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 76 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 168
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 2.3
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 166 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 327
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 328 EILMMQNRKYCAEIAH 375
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 158 TNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQMDSVR 301
+N+R + + ++ TTE G +T TL+ + T++ V+ Q ++
Sbjct: 559 SNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIK 606
>08_02_1245 - 25557201-25558199
Length = 332
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -3
Query: 243 VGHQVLTL-EPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVC 67
+G +++ L P D V++T F K + + DK+ D C P ++H +
Sbjct: 153 IGCRIVYLCREPKDVVISTWHFMN---KVIEGFSIDFDKAFELFVDGCSPFGPIWNHYLG 209
Query: 66 FF*KRDSEPXR 34
++ K EP R
Sbjct: 210 YWNKHVEEPDR 220
>12_02_0388 -
18486957-18487016,18487286-18489418,18489985-18490484,
18490728-18490899
Length = 954
Score = 26.2 bits (55), Expect = 9.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 136 RHQSDRYDKLKRNWRKPRGIDN 201
R + D +++K W K RG+D+
Sbjct: 933 RFEDDELEEIKARWNKDRGLDS 954
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 303 DLTESIWEHMTGLLVGTVTNVGHQVLTLEPPADSVVNTSRF 181
D + +WE G LV T+ GH V +L + V+ T +
Sbjct: 234 DCSIKVWETSQGKLVKTLQGHGHWVNSLALSTEYVLRTGAY 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,372,771
Number of Sequences: 37544
Number of extensions: 204279
Number of successful extensions: 570
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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