Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_H15
(351 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 77 6e-16
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 75 3e-15
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 71 7e-14
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 1.1
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.5
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 4.5
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 4.5
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 4.5
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 24 7.9
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 77.4 bits (182), Expect = 6e-16
Identities = 35/65 (53%), Positives = 50/65 (76%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 265
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 266 NIGSG 280
NIGSG
Sbjct: 61 NIGSG 65
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 74.9 bits (176), Expect = 3e-15
Identities = 34/64 (53%), Positives = 49/64 (76%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 265
+S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 266 NIGS 277
NIGS
Sbjct: 61 NIGS 64
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 70.5 bits (165), Expect = 7e-14
Identities = 31/64 (48%), Positives = 48/64 (75%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 265
+S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 266 NIGS 277
NIGS
Sbjct: 61 NIGS 64
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 26.6 bits (56), Expect = 1.1
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 68 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 238
R+ L+ + E S L+L + DV A++ E+IS IL + +W AL
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161
Query: 239 GINVRDLIT 265
G+N++D I+
Sbjct: 162 GLNIKDAIS 170
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 4.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 50 GLRQLARSKLKMVSKAELACVYSAL 124
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 257 GHGH*CLPRLWRTDL 213
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 4.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 126 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDXQR 4
+R + H TI + ER SCRRP L + RL+ +R
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 260 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 153
SGHG P L + + M L+ PL + W++ +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 23.8 bits (49), Expect = 7.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 200 LHLQPPLSRWWKFS 159
LH+Q L +WWK S
Sbjct: 439 LHVQEDLCKWWKES 452
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,237,662
Number of Sequences: 5004
Number of extensions: 23384
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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