Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_H13
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 34 0.035
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 34 0.035
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 32 0.19
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 31 0.44
U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical pr... 28 2.3
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 28 2.3
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 27 5.4
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 27 5.4
AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin prot... 26 9.4
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 34.3 bits (75), Expect = 0.035
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 108 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFS 278
EH SC+SG G +C C + D ISG H Q G G+K +R C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249
Query: 279 GRQHCVTVDCCCHGS 323
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 34.3 bits (75), Expect = 0.035
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 108 EHGASSCISGKRGRRC---CNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFS 278
EH SC+SG G +C C + D ISG H Q G G+K +R C L+ +
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249
Query: 279 GRQHCVTVDCCCHGS 323
GR HC + C C S
Sbjct: 1250 GR-HC-SQSCRCANS 1262
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 123 SCISGKRGRRC--CNIWHWGSVDSISGSHARFQLSGN 227
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 30.7 bits (66), Expect = 0.44
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 321 YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQQTPS 169
YH +S QL GH +V CLCSS +S S + +SQ TP+
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946
>U23513-5|AAP68948.1| 214|Caenorhabditis elegans Hypothetical
protein D2021.2b protein.
Length = 214
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 174 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 329
G V + H F +G +H + C T +RK +HC C + H
Sbjct: 23 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = +3
Query: 174 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 329
G V + H F +G +H + C T +RK +HC C + H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 27.1 bits (57), Expect = 5.4
Identities = 23/89 (25%), Positives = 32/89 (35%)
Frame = +3
Query: 42 NFLNQHSSFYTCAIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLS 221
N+ + + Y A A+ + HG C +G G C N G + A Q S
Sbjct: 135 NYHGKRCNRYCIANAKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCS 194
Query: 222 GNSGRKHSRCCTSILRKFSGRQHCVTVDC 308
G +RC + R CV DC
Sbjct: 195 CADGFNGTRC-----EQCLPRAGCVNGDC 218
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 27.1 bits (57), Expect = 5.4
Identities = 23/89 (25%), Positives = 32/89 (35%)
Frame = +3
Query: 42 NFLNQHSSFYTCAIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSHARFQLS 221
N+ + + Y A A+ + HG C +G G C N G + A Q S
Sbjct: 135 NYHGKRCNRYCIANAKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCS 194
Query: 222 GNSGRKHSRCCTSILRKFSGRQHCVTVDC 308
G +RC + R CV DC
Sbjct: 195 CADGFNGTRC-----EQCLPRAGCVNGDC 218
>AF040641-1|AAB94947.2| 203|Caenorhabditis elegans Calponin protein
2 protein.
Length = 203
Score = 26.2 bits (55), Expect = 9.4
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 193 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 104
L+E DP C ++ +++P++ +E +F
Sbjct: 68 LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,635,390
Number of Sequences: 27780
Number of extensions: 159039
Number of successful extensions: 337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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