Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_H08
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 156 1e-39
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 156 1e-39
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 1.4
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 1.8
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 3.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 5.6
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 24 7.4
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 24 7.4
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 7.4
SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces po... 24 7.4
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 24 9.8
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 24 9.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 24 9.8
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 24 9.8
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 9.8
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 156 bits (379), Expect = 1e-39
Identities = 71/101 (70%), Positives = 81/101 (80%)
Frame = +1
Query: 82 YLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 261
Y F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++
Sbjct: 13 YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72
Query: 262 GVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLXRVKENE 384
GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE
Sbjct: 73 GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANE 113
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 156 bits (379), Expect = 1e-39
Identities = 71/101 (70%), Positives = 81/101 (80%)
Frame = +1
Query: 82 YLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 261
Y F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++
Sbjct: 13 YTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSV 72
Query: 262 GVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLXRVKENE 384
GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE
Sbjct: 73 GVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANE 113
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 1.4
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 54 EFVIFEPCVTKLDG 13
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 117 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 221
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 3.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 312 DALRYNPSANTLVDNHTES 256
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -3
Query: 240 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 112
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 261 RCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP 362
R + +Q + K+YTE H + ++ +TRLP
Sbjct: 471 RFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLP 504
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 264 TESMSSHVVHATCLSMVYFVWHTLLNCTIASDVYNVS 154
TES+++H + A CL ++ H + + V V+
Sbjct: 144 TESLTAHYLFAMCLYRGLYIPHWIYRIAVHKKVIGVA 180
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 7.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 229 GRVYNVTAHALGVIVN 276
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC17H9.12c |||NADH-cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 266
Score = 24.2 bits (50), Expect = 7.4
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 22 LCNTRLEDDELQGLPAAAPGYLFARRF----RTHGTIPLSTYMKVYKVGDIVDIRG 177
+ + D +Q P YL A R + P+S+Y+ K GD +++RG
Sbjct: 77 IAKVTIRDPSMQVQRPYTPLYLDANELKFFIRKYEEGPVSSYIHSKKEGDTIELRG 132
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 318 DIDALRYNPSANTLVDN 268
D+DALR NP A L+DN
Sbjct: 33 DVDALRLNPEA-PLLDN 48
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 23.8 bits (49), Expect = 9.8
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 141 SVQSWRHC-RHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQACSR 290
S+Q C +H RQ+C+ GY + S V SC C + A SR
Sbjct: 36 SLQKCPACNKHCRQYCTKPGYDIYGNSVQTPSNVPY-YSCLMCKREIAASR 85
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 23.8 bits (49), Expect = 9.8
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +1
Query: 145 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 297
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 298 IPKRINIR 321
P +N++
Sbjct: 718 DPVTVNLK 725
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 61 LPAAAPGYLFARRFRTHGTIPLSTYMKVYKVGDIV 165
L A PGY+ + F G + TY+ Y V +++
Sbjct: 492 LAALNPGYVTSDDFGEDGDDTVHTYVSTYAVPNVL 526
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 173 LMSTMSPTLYTFMYVESGIVPC 108
L T PTLY F+ + G++ C
Sbjct: 1067 LQITRLPTLYRFIILFMGVISC 1088
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,572,002
Number of Sequences: 5004
Number of extensions: 30833
Number of successful extensions: 123
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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