Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_H04
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associat...   103   2e-23
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   5.0  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   6.6  

>SPAC4F10.14c |btf3|egd1, btt1, nac2|nascent polypeptide-associated
           complex beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score =  103 bits (247), Expect = 2e-23
 Identities = 56/122 (45%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
 Frame = +1

Query: 151 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTA--ATDDXXXXXXXXXXXVNTIPGIEEVN 324
           M+  KL KLQ+  RIGGKGTPRRK K    +A  A DD           +  + GI+EVN
Sbjct: 1   MDPSKLAKLQAGARIGGKGTPRRKVKKPSKSAMSAADDKKVQGALKKLNMQNLAGIQEVN 60

Query: 325 MIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIAS 504
           M KEDG VI+F  P   +SL   T AI G  E K  +E+LPGIL+ LGP+ L  L+++A 
Sbjct: 61  MFKEDGGVINFRAPTVHSSLPNETTAIYGKAEEKTLSEILPGILNNLGPESLTALRQMAE 120

Query: 505 SV 510
            +
Sbjct: 121 QL 122


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 512 PAPKPLEEDDEVPNLVGNFDEASNQRP 592
           P  + +E++DE  NL G+F E S ++P
Sbjct: 439 PEQQKVEKEDEHLNLQGSFIEESTKQP 465


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 139 KNSRMNSEKLKKLQSQVRIGGKGTPRRKKKV 231
           K  +   +KLKK   ++++    T +RK+KV
Sbjct: 148 KEKKEKKDKLKKKSKRLKLDDSHTQKRKRKV 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,533
Number of Sequences: 5004
Number of extensions: 45960
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)