Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_H04
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0411 - 17725661-17725842,17726066-17726104,17726379-177264... 128 3e-30
03_01_0067 - 538929-539143,539306-539344,539579-539635,539727-53... 126 1e-29
03_06_0698 + 35608666-35608709,35608810-35608958,35609493-356095... 82 3e-16
07_03_1028 - 23378140-23378802 31 0.73
09_02_0300 - 7073153-7073589,7074058-7074169 30 1.3
08_02_0850 + 21862110-21862394,21862555-21862723,21862901-218629... 29 2.2
08_02_0607 + 19285580-19286138,19286734-19287668 29 3.9
04_03_0354 + 14830325-14830826,14831491-14832416 29 3.9
04_03_0353 - 14785648-14787213 29 3.9
04_03_0347 + 14723118-14724548 28 6.8
08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741 27 9.0
04_04_0677 + 27195264-27195291,27196034-27196271,27196350-271965... 27 9.0
02_05_0258 + 27222058-27223198,27223297-27223460,27224399-272245... 27 9.0
>10_08_0411 -
17725661-17725842,17726066-17726104,17726379-17726435,
17726524-17726672,17727195-17727262,17727796-17727798
Length = 165
Score = 128 bits (309), Expect = 3e-30
Identities = 62/117 (52%), Positives = 80/117 (68%)
Frame = +1
Query: 151 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 330
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VNTIPGIEEVN+
Sbjct: 2 MNVDKLKKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIF 61
Query: 331 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 501
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 62 KDD-VVIQFLNPKVQASIGANTWVVSGTPQTKKLQDLLPSIINQLGPDNLDNLRRLA 117
>03_01_0067 -
538929-539143,539306-539344,539579-539635,539727-539875,
540298-540365,542009-542093,542185-542246,542612-542700,
543034-543088,544127-544252,544477-544576,544697-545499
Length = 615
Score = 126 bits (305), Expect = 1e-29
Identities = 61/117 (52%), Positives = 79/117 (67%)
Frame = +1
Query: 151 MNSEKLKKLQSQVRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMI 330
MN +KLKK+ VR GGKG+ RRKKK VH T TDD VN IPGIEEVN+
Sbjct: 441 MNVDKLKKMAGAVRTGGKGSMRRKKKAVHKTTTTDDKRLQSTLKRVGVNNIPGIEEVNIF 500
Query: 331 KEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIA 501
K+D VI F NPK QAS+ ANT+ ++G + K+ ++LP I++QLGPD L+ L+R+A
Sbjct: 501 KDD-VVIQFQNPKVQASIGANTWVVSGTPQTKKLQDLLPTIINQLGPDNLDNLRRLA 556
>03_06_0698 +
35608666-35608709,35608810-35608958,35609493-35609531,
35610024-35610163,35611130-35611244,35611281-35611399,
35611413-35611979
Length = 390
Score = 82.2 bits (194), Expect = 3e-16
Identities = 50/108 (46%), Positives = 59/108 (54%)
Frame = +1
Query: 187 VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGIEEVNMIKEDGTVIHFNNP 366
VR GGKGT RRKKK VH T TDD VNTIP IEEVN+ K+D VI F NP
Sbjct: 5 VRTGGKGTVRRKKKAVHKTGTTDDKRLQSTLKRVGVNTIPAIEEVNIFKDD-LVIQFVNP 63
Query: 367 KAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLKRIASSV 510
K+ ++LPGI++QLGPD + LKRIA +
Sbjct: 64 -------------------KELQDVLPGIINQLGPDNMEHLKRIAEEM 92
>07_03_1028 - 23378140-23378802
Length = 220
Score = 31.1 bits (67), Expect = 0.73
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Frame = +3
Query: 309 HRRGKYDQRG--RYCDTL*QPEGTSVAGRE--HVRDYRTRGE*ADHRDAPGYPQPARTRR 476
HR G Y QR R + L P S R+ H RDY H D Y A ++
Sbjct: 32 HRGGNYKQRPICRGDERLPMPPLHSKRRRDEHHRRDY--------HYDDDDYAYRASKKK 83
Query: 477 LEPTEKDCVECCPRLSHSRKTTRYLTSSATLTKPQTRGQGG 599
+ + P +R TTR +SS + TK ++ +GG
Sbjct: 84 KQQAAAEQAARMPNNRTTRPTTRRASSSRSRTKEESHARGG 124
>09_02_0300 - 7073153-7073589,7074058-7074169
Length = 182
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = -1
Query: 604 LQPPWPLV*GFVK-VADEVRYLVVFLEWLRRGQHSTQSFSVGSSRRVRAG*GYPGASLWS 428
L PP P+ GF++ E+ Y+++ EWLR + S++ + ++ RV G ++
Sbjct: 112 LPPPDPMELGFLRETVWELTYIMID-EWLREAELSSEVIRINTAPRV-IPCHLEGDNVGI 169
Query: 427 AYSPRVR 407
YSP VR
Sbjct: 170 LYSPTVR 176
>08_02_0850 +
21862110-21862394,21862555-21862723,21862901-21862965,
21863632-21863905,21863998-21864145,21864237-21864346,
21864440-21864495,21864568-21864624,21864733-21864876,
21865304-21865351
Length = 451
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 482 FKPSGPSWLRIPGSISVVCLFSPCPVIANVFAAS 381
F P GP W + PGS + +PCP A++F++S
Sbjct: 207 FYPLGPVW-QPPGSSTSKAPSAPCPPSASLFSSS 239
>08_02_0607 + 19285580-19286138,19286734-19287668
Length = 497
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +3
Query: 393 HVRDYRTRGE*ADHRDAPGYPQPARTRRLEPTEKDCVECCPRLSHSRKTTRYLTSSATLT 572
H R R RG A APG+ A L P++ D + P L HS +TT A L
Sbjct: 57 HRRLLRARGAGALD-GAPGFRFAAIDDGLPPSDADATQDVPALCHSVRTTCLPRFKALLA 115
Query: 573 K 575
K
Sbjct: 116 K 116
>04_03_0354 + 14830325-14830826,14831491-14832416
Length = 475
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +3
Query: 393 HVRDYRTRGE*ADHRDAPGYPQPARTRRLEPTEKDCVECCPRLSHSRKTTRYLTSSATLT 572
H R R RG A APG+ A L P++ D + P L HS +TT A L
Sbjct: 57 HRRLLRARGAGALD-GAPGFRFAAIDDGLPPSDADATQDVPALCHSVRTTCLPRFKALLA 115
Query: 573 K 575
K
Sbjct: 116 K 116
>04_03_0353 - 14785648-14787213
Length = 521
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 393 HVRDYRTRGE*ADHRDAPGYPQPARTRRLEPTEKDCVECCPRLSHSRKTT 542
H R R RG A APG+ A L P++ D + P L HS +TT
Sbjct: 51 HRRLLRARGARALD-GAPGFRFAAMDDGLPPSDADATQDVPALCHSVRTT 99
>04_03_0347 + 14723118-14724548
Length = 476
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 393 HVRDYRTRGE*ADHRDAPGYPQPARTRRLEPTEKDCVECCPRLSHSRKTT 542
H R +RG A PG+ A L P++ D + P L HS TT
Sbjct: 36 HRRMLASRGAAALDGGVPGFRFAAIPDGLPPSDADATQDIPALCHSTMTT 85
>08_02_0117 + 12767502-12767588,12768846-12768908,12769299-12770741
Length = 530
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 604 LQPPWPLV*GFVKVADEVRYLVVFLEWLRRGQHSTQSFSVGSSRRV 467
L PP P+ GF++ V ++ EWLR + S++ + ++ R+
Sbjct: 236 LPPPDPMELGFLRETVWVLTSIMSDEWLREAELSSEVIRINTAPRI 281
>04_04_0677 +
27195264-27195291,27196034-27196271,27196350-27196500,
27196578-27196972,27197270-27197339,27197414-27197696,
27197972-27198297,27198409-27199368
Length = 816
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 308 PGIVFTDNFLSDDCSFLSSVAAVT*TTFFLRLGVPLPPMR 189
PG+VF + D FL +V V +GVP PP R
Sbjct: 670 PGLVFDAGY-RDYLQFLCAVPGVDDAAVLRAVGVPCPPSR 708
>02_05_0258 +
27222058-27223198,27223297-27223460,27224399-27224575,
27224713-27224761,27224991-27225793
Length = 777
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -1
Query: 574 FVKVADEVRYLVVFLEWLRRGQHSTQSFSVGSSRRV 467
FV+ AD VR L LE RR H S SSR V
Sbjct: 351 FVRAADAVRALAPILEVGRRSYHPRSSVYHVSSRMV 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,043,182
Number of Sequences: 37544
Number of extensions: 328563
Number of successful extensions: 859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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