Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_H04
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...   165   3e-41
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   3.5  
L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome asse...    28   4.6  

>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score =  165 bits (400), Expect = 3e-41
 Identities = 79/126 (62%), Positives = 97/126 (76%), Gaps = 3/126 (2%)
 Frame = +1

Query: 142 NSRMNSEKLKKLQSQ---VRIGGKGTPRRKKKVVHVTAATDDXXXXXXXXXXXVNTIPGI 312
           +S+  +E++KKLQ+Q   VRIGGKGTPRRKKKV+H TAA DD           V  IPGI
Sbjct: 2   DSKAIAERIKKLQAQQEHVRIGGKGTPRRKKKVIHKTAAADDKKLQSNLKKLSVTNIPGI 61

Query: 313 EEVNMIKEDGTVIHFNNPKAQASLAANTFAITGHGENKQTTEMLPGILSQLGPDGLNRLK 492
           EEVNMIK+DGTVIHFNNPK Q S+ ANTF++TG  +NKQ TEMLPGIL+QLGP+ L  LK
Sbjct: 62  EEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGSADNKQITEMLPGILNQLGPESLTHLK 121

Query: 493 RIASSV 510
           ++A++V
Sbjct: 122 KLANNV 127



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 533 EDDEVPNLVGNFDEAS 580
           ED++VP LVG+FD AS
Sbjct: 137 EDEDVPELVGDFDAAS 152


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 267 AVIAQKVVSEHNSWHRRGKYDQRGR 341
           ++I+  V + H++WH  G  D RGR
Sbjct: 34  SIISGDVNAHHSAWHSEGSEDTRGR 58


>L23645-8|AAK26133.1|  282|Caenorhabditis elegans Peroxisome
           assembly factor protein19 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 512 PAPKPLEEDDEVPNLVGNFDEASNQR 589
           PAPKP   DDE+  L+ + D+ + Q+
Sbjct: 32  PAPKPRTTDDELDELMASADQEAAQK 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,395
Number of Sequences: 27780
Number of extensions: 282969
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)