Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_H03
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.17 |||transcriptional coactivator, multiprotein bridging ...   128   7e-31
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    33   0.036
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    29   0.44 
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   2.3  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    26   4.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   5.4  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   9.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.5  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   9.5  

>SPBC83.17 |||transcriptional coactivator, multiprotein bridging
           factor Mbf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  128 bits (309), Expect = 7e-31
 Identities = 66/136 (48%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
 Frame = +2

Query: 101 MSDWDTVTIL--RKKP-PKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA 271
           MSDWDTVT +  R  P  +    KT+  +N+ARR G  V T++KY  G   Q    ++  
Sbjct: 1   MSDWDTVTKIGSRAGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLT 60

Query: 272 KLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNI 451
           K+DRE E          + + I +GRQAKG +QKDL+ +I EKPQ+VNDYE+GR IPN  
Sbjct: 61  KIDRENEVKPPSTTGRSVAQAIQKGRQAKGWAQKDLSQRINEKPQVVNDYESGRAIPNQQ 120

Query: 452 VLGKIERAIGIKLRGK 499
           VL K+ERA+GIKLRG+
Sbjct: 121 VLSKMERALGIKLRGQ 136


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 128 LRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTN-KQHVTTKNTAKLDRETEELRH 304
           + K   K    K  +A N   R+G+P   +++   G N     T+ NT   D  + +LR 
Sbjct: 439 MSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSRDLRL 498

Query: 305 EKIPL 319
           EKI L
Sbjct: 499 EKILL 503


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 104 SDWDTVTILR-KKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTAKLD 280
           ++W  + + +  +   ASA K   A  +   QG+PVDTQ++  A      V  K     D
Sbjct: 147 ANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKKDGVED 206

Query: 281 RETEELRHEKIPLD 322
                L  EK  LD
Sbjct: 207 AYKHLLSIEKKVLD 220


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 507 ANHCSLLADRNNGIPWEAKTLLRFIY 584
           AN CS+ A  +N + W+  T  RF Y
Sbjct: 57  ANFCSISATDDNALRWDKITYHRFAY 82


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 502 FFSTKFYSNCPFNFSKNNVIWNATTS 425
           F  T+  SNC F F  + V WN+  S
Sbjct: 203 FIVTQSESNCKFRFDFSKVYWNSRLS 228


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = -2

Query: 135  LRRIVTVSQSDMFNVDHWYDKTKQEYYYWF 46
            +++I+  S   M+ ++ WY+  K++Y++ F
Sbjct: 4508 VQKILPCSAGQMYALNAWYNTEKKKYFHTF 4537


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 484 YSNCPFNFSKNNVIWNATTSFI 419
           Y  C F+FSK+  +W     F+
Sbjct: 157 YQTCKFHFSKSQCVWTLYLEFL 178


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 129 RIVTVSQSDMFNVDHWYDKTKQEYYYW 49
           RI  V+Q+   ++ H  DKT  EY  W
Sbjct: 738 RIAYVAQAAFTHLGHHPDKTPSEYIQW 764


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 71  VLSYQ*STLNMSDWDTVTILRKKPPKASALK-TEQAVNAARRQGIPVD 211
           +LSY     N+  WD  T L    P A+A K + + ++A    G P++
Sbjct: 541 LLSYLYFNCNLQRWDFTTSLTACQPIATAFKGSSKGIDAVNIIGEPLN 588


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 451 NVIWNATTSFIIIYNL 404
           NV+W+ TTSFI I+ +
Sbjct: 357 NVLWSMTTSFINIWRI 372


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 254 TTKNTAKLDRETEELRHEKIPLDLGKLIMQGRQAKGMSQKD 376
           T K+  K    T  +  E    D+GK+I  G+    ++QK+
Sbjct: 281 TAKDPVKALTSTNNVEEEDPAEDIGKIIASGQTRAYLAQKE 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,809
Number of Sequences: 5004
Number of extensions: 47787
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)