Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_H03
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0425 + 16975143-16975284,16975682-16975765,16977414-169774...   111   6e-25
06_03_0628 - 22909954-22910421                                        110   1e-24
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    30   1.8  
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    28   5.6  
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860     27   9.8  
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    27   9.8  

>08_02_0425 +
           16975143-16975284,16975682-16975765,16977414-16977496,
           16977610-16977652,16978311-16978378,16978954-16979043,
           16981444-16981620,16982291-16982354,16982452-16982500,
           16983399-16983858
          Length = 419

 Score =  111 bits (266), Expect = 6e-25
 Identities = 56/110 (50%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
 Frame = +2

Query: 107 DWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNK--QHVTTKNTAKLD 280
           DW+ V ++RKK P A+A K E+AVNAARR G  ++T +KY AGTNK     T+ NT +LD
Sbjct: 10  DWEPV-VVRKKAPTAAAKKDEKAVNAARRSGAEIETMKKYNAGTNKAASSGTSLNTKRLD 68

Query: 281 RETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAG 430
            +TE L HE++  DL K +MQ R  K M+Q  LA  I EKPQ++ +YE+G
Sbjct: 69  DDTESLAHERVSSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYESG 118


>06_03_0628 - 22909954-22910421
          Length = 155

 Score =  110 bits (264), Expect = 1e-24
 Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
 Frame = +2

Query: 107 DWDTVTILRKKPPKASALKTEQAVNAARRQGIPVDTQQKYGAGTNKQHVTTKNTA-KLDR 283
           DW+ V +LR+  PKA+ LK+ +AVN A R G PV+T +K  AGTNK        A KLD 
Sbjct: 13  DWEPV-VLRRTKPKAADLKSTRAVNQAMRTGAPVETVRKAAAGTNKAAAGAAAPARKLDE 71

Query: 284 ETEELRHEKIPLDLGKLIMQGRQAKGMSQKDLATKICEKPQIVNDYEAGRGIPNNIVLGK 463
            TE     ++  ++   I + R AKG SQ +LA +I E+ Q+V +YE+G+ +P   VL K
Sbjct: 72  STEPAGLGRVGAEVRGAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAVPVQAVLAK 131

Query: 464 IERAIGIKLRGK 499
           +ERA+ +KLRGK
Sbjct: 132 MERALEVKLRGK 143


>03_06_0311 +
           33054022-33054118,33056109-33056353,33057058-33057398,
           33057488-33057538,33057623-33057695,33058229-33058333,
           33060124-33060206,33061209-33061249,33061659-33063120,
           33063368-33064847,33064958-33065122,33065232-33065424,
           33065502-33065613,33065702-33065849,33065951-33066148,
           33066234-33066512,33066612-33066773,33066872-33067090,
           33067481-33067612
          Length = 1861

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 335 IMQGRQAKGMSQKDLATKICEKPQIVNDY 421
           +M+ R  +G SQK++  KICE  +I NDY
Sbjct: 677 MMKQRGKRGTSQKNIYIKICE-TEIANDY 704


>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 436 ATTSFIIIYNLWFF--TNFSGEVFLTHS 359
           A   F I+  LWF+  T F G VF+TH+
Sbjct: 91  ALIPFSILKLLWFYLQTTFKGRVFMTHA 118


>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
          Length = 335

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 209 DTQQKYGAGTNKQHVTTKNTAKLDRETE 292
           D ++++  GTN+QHV  +  A+L R  +
Sbjct: 233 DARRRFPPGTNEQHVLERAQAELSRRAD 260


>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 481 NKTSWKRKRPTTAASWRTEI 540
           N+  WKRK  TT A W T +
Sbjct: 270 NQQGWKRKPRTTFADWNTSL 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,095
Number of Sequences: 37544
Number of extensions: 303992
Number of successful extensions: 770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)