Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_G23
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 1.0
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 1.4
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 2.4
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 3.2
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 4.2
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 4.2
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 4.2
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 7.3
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 25 7.3
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 24 9.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 24 9.7
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 1.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 326 FAVAAIAGQECYFYCWLTP 270
FAV A A E +YCWL+P
Sbjct: 181 FAVVATAVSEDAWYCWLSP 199
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.1 bits (57), Expect = 1.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 105 QLKAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTE 257
+L ++L A IT+K +P +A T +F ++S P I + N + K E
Sbjct: 700 KLCKLDLAKANSITLKSEP--SSAVSTHSFEVHLSMPGTQIKSANLAEKME 748
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.2 bits (55), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 276 EPTVEITLLPCNCSNCKNTESDF 344
+PT+ T + C CS C +T S F
Sbjct: 1093 KPTIAPTNVACCCSKCNSTMSPF 1115
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 260 HFGLHRAIGICDCYFRCTDVMSKI 189
HF I IC CY+R D S I
Sbjct: 585 HFSFRSQILICWCYYRLNDFKSLI 608
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 304 PAIAATAKI---QKVTLRSENLTCLEILQLLNKXLSSLA 411
PAI A A I Q + SENLT ++L+L L+ +A
Sbjct: 75 PAIKAIANINGVQVTNMGSENLTPADVLKLAKLILAEVA 113
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 304 PAIAATAKI---QKVTLRSENLTCLEILQLLNKXLSSLA 411
PAI A A I Q + SENLT ++L+L L+ +A
Sbjct: 75 PAIKAIANINGVQVTNMGSENLTPADVLKLAKLILAEVA 113
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 272 PVTQHFGLHRAIGICDCYFRCTDVMSKIPCVSCVFSKWIKFYGNFFSS 129
PV + G +G C+++C D S I + + S + K N FS+
Sbjct: 1114 PVDANLGKILVLG---CFYKCVDAASSIVAMLTIGSPFRKSVDNEFSA 1158
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 299 ECYFYCWLTPVTQHFGLHRAIGICDCYF 216
+ F C+ PV Q+ IGIC+ +F
Sbjct: 301 DALFECFDVPVVQYMYQENIIGICNEHF 328
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 228 TNPNCSVKTEVLCDRSEPTVEITLLPCN 311
TNPNC + +L R V L PCN
Sbjct: 82 TNPNCRPEQGLLKLRKSMGVWANLRPCN 109
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 158 SIWRKRNSHKEFCSLHQ 208
S+W KR H + SLHQ
Sbjct: 1250 SVWNKREHHPKPFSLHQ 1266
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 24.2 bits (50), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 85 TPLDLLIVPLYGNRHYLFPTGITGN 11
TPL +V L+ ++L P G+T N
Sbjct: 605 TPLQNNLVELWSLLYFLMPAGVTQN 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,436
Number of Sequences: 5004
Number of extensions: 33470
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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