Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G23
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448...    29   2.4  
04_03_0273 - 13742351-13743357,13743617-13743731                       29   2.4  
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591...    27   9.6  

>08_02_0099 +
           12343518-12343678,12344193-12344393,12344669-12344846,
           12347201-12347463,12347596-12347874,12348045-12349182,
           12349303-12349473
          Length = 796

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -3

Query: 401 ERXLFN-NWRI---SRQVRFSLLKVTFCIFAVAAIAG 303
           E  LF+ NWR    + QVR+ +LK TFC FA+  I G
Sbjct: 57  ENDLFDQNWRSRGKADQVRYVVLKWTFC-FAIGIITG 92


>04_03_0273 - 13742351-13743357,13743617-13743731
          Length = 373

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 127 FKLTAFSCFPMAETTPLDLLIVPLYGNRHYLFPTGITG 14
           F  T+  C P A+ T + LL +PL   R  L+ +G  G
Sbjct: 108 FATTSTGCLPSADVTLIKLLGLPLSTKRVMLYQSGCFG 145


>04_04_1445 -
           33658355-33658417,33658536-33658669,33659056-33659116,
           33659197-33659356,33660032-33660081,33662237-33662290,
           33662630-33662704,33662821-33662949,33663065-33663152,
           33663266-33663372,33663513-33663561,33663657-33663760,
           33663941-33663980,33664409-33664659,33664674-33664686,
           33665846-33666355,33666437-33667657,33667973-33668221,
           33668305-33668531
          Length = 1194

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -3

Query: 377 RISRQVRFSLLKVTFCI-FAVAAIAGQECYFYCWLTPVTQHFGLHRAIGICDCYFRCTDV 201
           +I R   F   +   CI  AV     +   + CWL  + QH G +  +  C+      ++
Sbjct: 655 KIDRSCNFK--EALMCIGLAVREKNDEPFQWMCWLRHLPQHGGTNDQVDFCNILGALEEL 712

Query: 200 MSKIPC 183
           +  + C
Sbjct: 713 LEAVSC 718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,585,833
Number of Sequences: 37544
Number of extensions: 193062
Number of successful extensions: 472
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)