Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G23
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   0.91 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   3.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   6.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -1

Query: 178 VAFSPNGSNFMVIFLAAFKLTAFSCFPMAETTPLDLLIVPL 56
           V + P   N+         LT ++ FP+ E + +   ++P+
Sbjct: 185 VEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPM 225


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 164 KWIKFYGNFFSSL 126
           KW+  +GNF  SL
Sbjct: 574 KWLDIHGNFIESL 586


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 326 FAVAAIAGQECYFYCWL 276
           + + AIAG +C+   WL
Sbjct: 665 YLMYAIAGSQCFINIWL 681


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 129 PLN*LLLVVFQWLKQHLWIF*LYRYTGIDIIY 34
           P+N + L++ Q +    WI  +Y   GI I Y
Sbjct: 76  PVNNINLILLQNIIDICWITMVYSLLGIIIAY 107


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 191 IPCVSCVFSKWIKFY 147
           +PCV  V   W+ F+
Sbjct: 253 VPCVLIVVLSWVSFW 267


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 222  AITNPNCSVKTEVLCDRSEPTVEIT 296
            A++ PN  VK  ++  + +PT +IT
Sbjct: 985  ALSVPNIFVKDVLVFHQGQPTNDIT 1009


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 188 PCVSCVFSKWIKFYGN 141
           PCV  V   W+ F+ N
Sbjct: 223 PCVLLVVLSWVSFWLN 238


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 342 SHFLYFCSCCNCRARVLFLLLAH 274
           S  LY C  CN R R    L  H
Sbjct: 32  SDTLYVCEFCNRRYRTKNSLTTH 54


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 191 IPCVSCVFSKWIKFY 147
           IPC   V   W+ F+
Sbjct: 250 IPCCMLVIVSWVSFW 264


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 191 IPCVSCVFSKWIKFY 147
           IPC   V   W+ F+
Sbjct: 250 IPCCMLVIVSWVSFW 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,980
Number of Sequences: 438
Number of extensions: 2629
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)