Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_G22
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 28 0.73
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 28 0.97
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 28 0.97
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 27 1.7
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.7
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe... 26 3.0
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 25 6.8
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 25 9.0
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 25 9.0
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 25 9.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 25 9.0
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 25 9.0
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 223 LSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQL--HQAMQS 396
L S N W L D V+ EE+N+ ++++ L+ + Y +S+ + H +
Sbjct: 316 LLSKNRNWVLMRDIVQLEEYNSYLLDHRIVSAFLKPLSEKGNYKDILSLISVWQHSVWRP 375
Query: 397 SLNNSGIVHNFQL 435
SL +V++F +
Sbjct: 376 SLAYLQVVYSFSM 388
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3
Query: 122 FRVESIKYYIVSINMFEKIKIKQVFFNHL 36
F +ES++++ + IN EKI +K +F+N L
Sbjct: 43 FFIESLQFHYL-INQSEKISLKLIFWNEL 70
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 274 EEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNS 411
EE ++E K Y+ K ++E H Q+ +EQ + + +L S
Sbjct: 25 EEIVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKS 70
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 250 LKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVHNF 429
L++ +K+ +A+++N + L L + S EQL QA + + + N
Sbjct: 21 LRIHELKQHSRDADDQNPEQIKRQLMSKLLILREANRKSYEQLVQAKTITAEHKSELDNA 80
Query: 430 QLPLSPRQMSTLMLKT 477
++ L Q L LKT
Sbjct: 81 RIRLQALQYKKLHLKT 96
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.1 bits (57), Expect = 1.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = -2
Query: 342 FQLMFLKTVHVHFVILFFGIMFFSFHKIH 256
F F VH+H+++ G+ F+ H
Sbjct: 403 FMFAFCSKVHIHYIVSLIGLTIFNIADYH 431
>SPAC869.06c |||cation binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 199 VTEKN*RHLSSLNAEWFLKMDFVKREEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQL 378
+ EK+ RH L E K +K + N ++ M+SLQKH E E H I +
Sbjct: 90 MAEKD-RHEHQLVKEMLYKFQSMKANQSNFIPALDEL-MESLQKHIDEEEQH-DIPFLEK 146
Query: 379 HQAMQSSLN 405
H + + SL+
Sbjct: 147 HLSEEESLH 155
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +1
Query: 271 REEHNAEEENYKMYMDSLQKHQLESEYHTQISMEQLHQAMQSSLNNSGIVH----NFQLP 438
++ HN E +K+ DS E+ ++ QAM S + N Q+P
Sbjct: 85 QDYHNLESSPFKLQCDSPYNVPPENMFNQNPDFANFFQAMLQSAKEGSDTNFQGENEQIP 144
Query: 439 LSPRQMSTLMLKTNHL 486
+ + L+ K HL
Sbjct: 145 QATAPLKNLVEKYAHL 160
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 274 EEHNAEEENYKMYMDSLQKHQLESE 348
+ A +E++K+Y D L QLE E
Sbjct: 505 DNFGARDEDWKVYHDVLTAEQLEEE 529
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 113 ESIKYYIVSINMFEKIKIKQVFFNHLTLQPKERKL 9
E+++ Y+VS+ FE + + +T+QPK+ +L
Sbjct: 95 EAVEAYLVSL--FEDTNLCAIHGKRVTIQPKDMQL 127
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 113 ESIKYYIVSINMFEKIKIKQVFFNHLTLQPKERKL 9
E+++ Y+VS+ FE + + +T+QPK+ +L
Sbjct: 95 EAVEAYLVSL--FEDTNLCAIHGKRVTIQPKDMQL 127
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 24.6 bits (51), Expect = 9.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 455 ICLGESGNWKLW 420
+C G +G W+LW
Sbjct: 342 VCWGRTGGWRLW 353
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 113 ESIKYYIVSINMFEKIKIKQVFFNHLTLQPKERKL 9
E+++ Y+VS+ FE + + +T+QPK+ +L
Sbjct: 95 EAVEAYLVSL--FEDTNLCAIHGKRVTIQPKDMQL 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,536
Number of Sequences: 5004
Number of extensions: 42104
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -