Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G18
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    34   0.019
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    28   0.97 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   1.7  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   3.9  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   3.9  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.0  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   9.0  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   9.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.0  

>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +3

Query: 390 LRDGQEIKVEGATVKVHHTPGHTTDHIVLTC--LEENILFSGDCILGEGTA-VFEDLYTY 560
           L+D + +++    ++  HTP HT D I        E+ +F+GD +   G    FE     
Sbjct: 97  LQDKETLRIGNVQIEALHTPCHTRDSICFYAHSSNEHAVFTGDTLFNAGCGRFFEGTAAE 156

Query: 561 MK-SLQNILDLKPN--XIYP 611
           M  +L  +L   PN   IYP
Sbjct: 157 MHIALNAVLSSLPNNTVIYP 176


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 393 RDGQEIKVEGATVKVHHTPGHTTDHI--VLTCLEENILFSGDCILGEGTAVF 542
           +D +  KV    V+  HTP HT D I   ++   +  +F+GD +   G   F
Sbjct: 98  KDKEIFKVGEVQVEALHTPCHTQDSICYYVSSPSKRAVFTGDTLFTSGCGRF 149


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 137 EKRLIKLIRRTYPF-STMAAVIPPVTKLSTSIIRILGCNPGPMTLQGTNTYLIGSGKKKS 313
           E R ++L+ +      T+ +VIP    L+   +R++  N    T+Q  N  L  + K+K+
Sbjct: 647 ELRCLRLLEKQRSLRETINSVIPHSDSLAAGNLRLMFRNVKRQTMQEANLVLALAEKQKT 706

Query: 314 HNMEAQEE 337
            +   Q+E
Sbjct: 707 EHAMRQKE 714


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 324 KHKKSSEDSADNELPASIPI 383
           KH  S+ED  D+ LPA +PI
Sbjct: 9   KHSGSTEDEYDSYLPALMPI 28


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 327 HKKSSEDSADNELPASIPIEWLR 395
           H K+++    NELP  IP  WLR
Sbjct: 584 HSKNTDKHVGNELPQDIP-SWLR 605


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 410 NFLSVSKPFYWNRCW*FI 357
           NF+S+S P +W R + F+
Sbjct: 217 NFVSISSPEFWERTYMFL 234


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 170 YPFSTMAAVIPPVTKLSTSIIRILGCNPGPMT 265
           Y F      +PPV +L  S +++LG   G MT
Sbjct: 224 YFFFDDIVTLPPVQQLEQSTLQLLGILSGGMT 255


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 336 SSEDSADNELPASIP 380
           SS DS D ELP SIP
Sbjct: 356 SSGDSTDQELPQSIP 370


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 334  FLCFHIMGFFFTGTNEIRVCALKSHWTWITTE 239
            +L FH +  FFT ++ IR   L   W  I  +
Sbjct: 2527 YLTFHGINLFFTDSHLIRTFKLDVRWIQIDNQ 2558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,693
Number of Sequences: 5004
Number of extensions: 58489
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)