Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G18
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 297 PVKKNPIIWKHKKSSEDSADNELPA 371
           P+KK PI   +K+++ + A  E P+
Sbjct: 330 PLKKEPITQSNKRTAGNLATREHPS 354


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 381 IEWLRDGQEIKVEGATVKV 437
           + WL+DG+ + +E A +++
Sbjct: 339 VSWLKDGKPLGLEEAVLRI 357


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 208 YWWNHSSHSGKR 173
           Y WNH+  SG+R
Sbjct: 13  YQWNHTVSSGER 24


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 438 HHTPGHTTDHIVLT 479
           HHT GH   HI  T
Sbjct: 416 HHTMGHGHSHIHAT 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,150
Number of Sequences: 438
Number of extensions: 3926
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)