Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_G15
(441 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 192 1e-49
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 30 0.65
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 30 0.65
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 3.5
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 3.5
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 3.5
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 3.5
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 28 3.5
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 27 4.6
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 27 4.6
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 27 4.6
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 27 4.6
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 192 bits (468), Expect = 1e-49
Identities = 83/128 (64%), Positives = 111/128 (86%)
Frame = +2
Query: 56 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 235
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 236 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDXASKKEIQDILVXYDRSLLVADPRR 415
DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVD SK+E+++I YD+SLLVADPRR
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124
Query: 416 WQPXKFGG 439
+ KFGG
Sbjct: 125 RESKKFGG 132
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 271 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 92
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 91 G 89
G
Sbjct: 208 G 208
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 271 YMTTTLDCHSDVNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 92
YMTT+ + NHR + L E ++ L + S + + AP Q T A G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207
Query: 91 G 89
G
Sbjct: 208 G 208
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 265 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 167
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 324
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 438
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 205 FARQGKILYG*HQSDSQGWWSCSTSLRYQTSYFKGSDRLL 324
FAR +Y + WW+ S Y ++ KG+D LL
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALL 701
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -3
Query: 265 TTTLDCHSDVNHREFFLAEQKD-RF--LKFVLQQSG 167
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 211 RQGKILYG*HQSDSQ---GWWSCSTSLRYQTSYFKGSDRLLPEIC 336
R+ +I+ H + GW S L Y+T+Y + L P+ C
Sbjct: 259 RENEIIINIHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 27.5 bits (58), Expect = 4.6
Identities = 27/99 (27%), Positives = 49/99 (49%)
Frame = +2
Query: 59 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 238
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 239 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDXASKK 355
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 625
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 27.5 bits (58), Expect = 4.6
Identities = 27/99 (27%), Positives = 49/99 (49%)
Frame = +2
Query: 59 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 238
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 239 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDXASKK 355
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 623
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 27.5 bits (58), Expect = 4.6
Identities = 27/99 (27%), Positives = 49/99 (49%)
Frame = +2
Query: 59 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 238
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 239 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDXASKK 355
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 623
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 27.5 bits (58), Expect = 4.6
Identities = 27/99 (27%), Positives = 49/99 (49%)
Frame = +2
Query: 59 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 238
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 239 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDXASKK 355
++ G +++ IR AI +AF+Q YV+ K+
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYVEVHMKQ 625
>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
F16D3.4 protein.
Length = 1232
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +2
Query: 128 MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGG 265
++ + P+D + R + ++L+ P+L LG E + + + + V GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,569,966
Number of Sequences: 27780
Number of extensions: 206747
Number of successful extensions: 510
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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