Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G14
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   128   6e-31
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   128   6e-31
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   1.6  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   6.5  
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ...    25   6.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   6.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  128 bits (308), Expect = 6e-31
 Identities = 55/81 (67%), Positives = 67/81 (82%)
 Frame = +1

Query: 127 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSH 306
           RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S 
Sbjct: 22  RRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSS 81

Query: 307 ELPRYGVKVGLTNYAAAYSTG 369
           ELPRYG+K GL N+ AAY+TG
Sbjct: 82  ELPRYGIKWGLANWTAAYATG 102



 Score = 29.9 bits (64), Expect = 0.23
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 63  MGFVKVVKNKQYFKRYQVKF 122
           M F+K VK+  YF RYQ K+
Sbjct: 1   MPFIKAVKSSPYFSRYQTKY 20


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  128 bits (308), Expect = 6e-31
 Identities = 55/81 (67%), Positives = 67/81 (82%)
 Frame = +1

Query: 127 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSH 306
           RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S 
Sbjct: 22  RRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSS 81

Query: 307 ELPRYGVKVGLTNYAAAYSTG 369
           ELPRYG+K GL N+ AAY+TG
Sbjct: 82  ELPRYGIKWGLANWTAAYATG 102



 Score = 29.9 bits (64), Expect = 0.23
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 63  MGFVKVVKNKQYFKRYQVKF 122
           M F+K VK+  YF RYQ K+
Sbjct: 1   MPFIKAVKSSPYFSRYQTKY 20


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 394 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 302
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 232 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 354
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 95  LFVLHNFNESHILNLSYKVASTDGTPS 15
           LF L ++NE+ + +L+ KV   DGT S
Sbjct: 88  LFGLEHWNENILNHLTAKVEEPDGTAS 114


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -2

Query: 149 SVFPSRRLVEFYLVPLEVLFVLHNFNESHIL 57
           S+F ++ + +FY+  L  LFV++ + ESH++
Sbjct: 792 SLFQNQDVQQFYMHSLRSLFVVY-YYESHLM 821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,245
Number of Sequences: 5004
Number of extensions: 41507
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)