Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_G14
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 124 5e-29
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 123 7e-29
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 5.0
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 6.5
02_04_0381 - 22497519-22497769,22498157-22498247 27 6.5
06_03_0957 + 26307062-26308987 27 8.7
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 27 8.7
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 124 bits (298), Expect = 5e-29
Identities = 64/133 (48%), Positives = 79/133 (59%)
Frame = +1
Query: 73 LKL*RTNNTSRGTK*NSTRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 252
+K +TN + + RRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Q
Sbjct: 5 VKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQ 61
Query: 253 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXX 432
+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 62 IVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNI 121
Query: 433 XXXXXEYNVEPVD 471
+Y VEP D
Sbjct: 122 EATGEDYYVEPAD 134
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 66 GFVKVVKNKQYFKRYQVKF 122
GFVK K Y KR+QVKF
Sbjct: 3 GFVKTQKTNAYHKRFQVKF 21
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 123 bits (297), Expect = 7e-29
Identities = 61/115 (53%), Positives = 72/115 (62%)
Frame = +1
Query: 127 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSH 306
RRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSH
Sbjct: 23 RRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSH 79
Query: 307 ELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 471
ELPRYG++VGLTNYAAAY TG +Y VEP D
Sbjct: 80 ELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPAD 134
Score = 31.5 bits (68), Expect = 0.40
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 66 GFVKVVKNKQYFKRYQVKF 122
GFVK K YFKR+QVKF
Sbjct: 3 GFVKTQKTHAYFKRFQVKF 21
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 190 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 312
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 251 WHVTSLLERRTIRRYLGVLY 192
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 321 WCEGWSDKLCCSIFNWSAISTKTASK 398
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
>06_03_0957 + 26307062-26308987
Length = 641
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 364 LNMLQHNLSDQPSHHNVATHVNKQRTQYGHLQSES 260
L +L L D+P HH V T +R Q H++ E+
Sbjct: 462 LGLLLSELCDEPWHHRVITF--SERPQLHHIKGET 494
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 251 WHVTSLLERRTIRRYLGVLYL 189
W S LERR RRYL + Y+
Sbjct: 771 WKYVSKLERRETRRYLEMFYI 791
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,268
Number of Sequences: 37544
Number of extensions: 258253
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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