Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_G10
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 190 2e-49
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 190 2e-49
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 30 0.27
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 1.1
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 4.4
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 4.4
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 7.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.7
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 7.7
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 190 bits (462), Expect = 2e-49
Identities = 85/158 (53%), Positives = 113/158 (71%)
Frame = +2
Query: 80 MRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGR 259
++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK A+R GR
Sbjct: 15 LKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGR 74
Query: 260 HCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKN 439
H G+GKR+GTA ARMP +W + KID+HLYH+LY++AKGN FK+
Sbjct: 75 HTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKH 134
Query: 440 KRVLMEYIHRKKAEKAXTNMLSDQAEAPRNKVKEAPQR 553
KR L+E+I R KAE T ++ +Q +A R + K A QR
Sbjct: 135 KRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQR 172
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 190 bits (462), Expect = 2e-49
Identities = 85/158 (53%), Positives = 113/158 (71%)
Frame = +2
Query: 80 MRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGR 259
++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK A+R GR
Sbjct: 15 LKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGR 74
Query: 260 HCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKN 439
H G+GKR+GTA ARMP +W + KID+HLYH+LY++AKGN FK+
Sbjct: 75 HTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKH 134
Query: 440 KRVLMEYIHRKKAEKAXTNMLSDQAEAPRNKVKEAPQR 553
KR L+E+I R KAE T ++ +Q +A R + K A QR
Sbjct: 135 KRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQR 172
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.9 bits (64), Expect = 0.27
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 181 TILDHLTDVLSGVGVCDLIDFIWIQPHLLFTTSHXQRLQAS 59
+I +H++DV G+ V LI+ + I+P +LF + + L S
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILFKANGLRVLMIS 391
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 216 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 314
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = -3
Query: 517 LSLVAKHVRXGLLSLLPVDVLHEHTLVLEHITLRLHV 407
LSL K V + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 477 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 385
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +2
Query: 98 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 244
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 245 RRKGR 259
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 152 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 268
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 293 WLYLFSYQSHSDDPFYVLLCFCGHERGS 210
W Y+S D FY ++ F H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,981
Number of Sequences: 5004
Number of extensions: 50641
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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