Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G08
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   229   2e-61
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   229   2e-61
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   0.84 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.4  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    26   4.5  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   5.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   5.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   5.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  229 bits (560), Expect = 2e-61
 Identities = 101/124 (81%), Positives = 111/124 (89%)
 Frame = +1

Query: 40  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 219
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 220 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 399
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 400 KPQG 411
           KP G
Sbjct: 121 KPNG 124



 Score = 49.2 bits (112), Expect = 4e-07
 Identities = 24/48 (50%), Positives = 32/48 (66%)
 Frame = +2

Query: 416 VARVRXGQPIMSVRSSDRWKAXVIEALRXAKFKFPGTSKDLRIKEVGF 559
           VARV  GQ +MSVR+ D  +A  IEALR  ++KFPG  + +  K+ GF
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 29.9 bits (64), Expect = 0.27
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 519 PERQKIYVSKKWGFXKY 569
           P +Q+I VSKKWGF +Y
Sbjct: 160 PGQQRIIVSKKWGFSQY 176


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  229 bits (560), Expect = 2e-61
 Identities = 101/124 (81%), Positives = 111/124 (89%)
 Frame = +1

Query: 40  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 219
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 220 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 399
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120

Query: 400 KPQG 411
           KP G
Sbjct: 121 KPNG 124



 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 24/48 (50%), Positives = 32/48 (66%)
 Frame = +2

Query: 416 VARVRXGQPIMSVRSSDRWKAXVIEALRXAKFKFPGTSKDLRIKEVGF 559
           VARV  GQ +MSVR+ D  +A  IEALR  ++KFPG  + +  K+ GF
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 29.9 bits (64), Expect = 0.27
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 519 PERQKIYVSKKWGFXKY 569
           P +Q+I VSKKWGF +Y
Sbjct: 160 PGQQRIIVSKKWGFSQY 176


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 64  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 240
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 241 G 243
           G
Sbjct: 94  G 94


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 435  PMRTRATVTLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 298
            P     + T +LAKR T PSL P  S+    H I  +  ++ KS A+
Sbjct: 950  PRSEPVSTTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 142  DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 285
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 97  SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 207
           S FC   PDPK       K  A+ DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 121 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 240
           DPK+R+F    KRA   +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 283 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 387
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 107 VGVYLIPRSVSSIWV 151
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 54 WPAPHGDLYKVTPTTSK 4
          WP P GDLY   P  ++
Sbjct: 49 WPYPRGDLYSWVPVLNR 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,746
Number of Sequences: 5004
Number of extensions: 51474
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)