Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G05
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   225   2e-59
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   224   4e-59
02_01_0295 - 1973115-1973404,1974138-1974663                           29   2.1  
03_02_0109 + 5671418-5671631,5675610-5675690,5676249-5676340,567...    29   2.8  
02_05_0956 - 33064104-33066425                                         28   5.0  
11_06_0283 + 21905706-21905835,21906059-21906132                       28   6.5  
10_05_0115 - 9300918-9300972,9301299-9301396,9301476-9301556,930...    28   6.5  
03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017     28   6.5  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   8.7  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  225 bits (551), Expect = 2e-59
 Identities = 108/176 (61%), Positives = 134/176 (76%), Gaps = 4/176 (2%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 398
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 399 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAK 560
            ++PGLTD   PR  GPKRASKIRKLFNL+K+DDVR+YV   +R    K GK+ +K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSK 176


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  224 bits (548), Expect = 4e-59
 Identities = 108/176 (61%), Positives = 133/176 (75%), Gaps = 4/176 (2%)
 Frame = +3

Query: 45  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 225 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 398
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 399 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAK 560
            ++PGLTD   PR  GPKRASKIRKLFNLSK+DDVR+YV   +R    K GK+ +K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSK 176


>02_01_0295 - 1973115-1973404,1974138-1974663
          Length = 271

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = +3

Query: 282 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 455
           G S  +  + G ++    RG +   + S  AL  +  GA   PG       +P R+G  +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224

Query: 456 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 545
            +KIRKL  +  ++D++  ++K  +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253


>03_02_0109 +
           5671418-5671631,5675610-5675690,5676249-5676340,
           5676433-5676513,5676594-5676691,5676872-5676953,
           5677050-5677088
          Length = 228

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 581 LGALMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF 402
           +G  ++GF +FFSFLG    FD     +I    +  L+  G T G  +      ++ +N+
Sbjct: 100 IGLGLTGFGVFFSFLGIIFFFD---KGLIAMGNILFLSGLGLTIGLKSTMQF-FTKPKNY 155

Query: 401 LGTLA 387
            GT++
Sbjct: 156 KGTIS 160


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 539 LGWEHAFDDITTYIIFFAKV 480
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


>11_06_0283 + 21905706-21905835,21906059-21906132
          Length = 67

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 602 GVTSLWILGALMSGFSIFFSFLGWEHAF 519
           G   +WI G  M GF I    L WEH F
Sbjct: 41  GSGGMWICG--MCGFGILREILKWEHEF 66


>10_05_0115 -
           9300918-9300972,9301299-9301396,9301476-9301556,
           9301635-9301726,9301832-9301859
          Length = 117

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -2

Query: 581 LGALMSGFSIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF 402
           +G  ++GF +FFSFLG    FD     ++    +  L+  G T G   +     ++ +N+
Sbjct: 11  IGIGLTGFGVFFSFLGIIFFFD---KGLLAMGNILFLSGLGLTIGL-KSTLQFFTKPKNY 66

Query: 401 LGTLA 387
            GT++
Sbjct: 67  KGTIS 71


>03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017
          Length = 756

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 123 RYEACARPPLRTTSGI--PLPGTKRLTS*LRVNPVERQANEK 4
           R E+ + PP R    +  P PG   + + LRV PV+R+A  K
Sbjct: 332 RVESSSTPPSRVMLYVQGPDPGVDLMVAGLRVFPVDRKARAK 373


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 81  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 170
           +KL+ E+ DE KLRI YEK+       D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,180,900
Number of Sequences: 37544
Number of extensions: 416900
Number of successful extensions: 1188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)