Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G03
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    30   1.3  
01_03_0163 + 13346586-13347809                                         28   5.4  
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    27   9.5  

>09_06_0328 + 22365308-22365415,22365743-22366018,22366166-22366417,
            22366542-22366939,22367028-22368021,22368199-22368409,
            22368515-22368749,22368874-22368996,22369190-22369310,
            22369416-22369625
          Length = 975

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 326  EVEDFFNDDCDLLKNFPSAATKIEINNTTSFYPPSPP 436
            +V+   N+  DLL  + +A T +E  + T   PP PP
Sbjct: 927  KVQRLLNEFMDLLSEYEAAETNVEQMDVTPTPPPPPP 963


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 272 SWAAAIDLLTNDECRLLLEVED 337
           SW AA+D +T DE R LLE  D
Sbjct: 115 SWDAALDGITADEARALLESID 136


>11_01_0466 +
           3607947-3610608,3610725-3611018,3611494-3611895,
           3611984-3612217,3614113-3614138,3614446-3614633,
           3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 141 NGALTGQISPSSQNTNIIRHQSLWT-FIRIRGTKSLQQ*VRVRRSHGLRPSICSLTMSAV 317
           N  L G ISPS  N   ++H SL T     R  +SL    R+R  +    ++  +  S  
Sbjct: 83  NQNLAGNISPSLGNLTFLKHLSLATNEFTGRIPESLGHLRRLRSLYLSNNTLQGIIPSFA 142

Query: 318 CCSKLRI 338
            CS LR+
Sbjct: 143 NCSDLRV 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,675
Number of Sequences: 37544
Number of extensions: 291527
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)