Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_G03
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z99281-7|CAC42379.1|   77|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 178 KTPTSLDINPSGLLFAFVELNHYNNEC 258
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>Z81558-5|CAB04542.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = -1

Query: 502 CIDCLAGCRRSLASSAGLGFQLRR*WRVETRSVIDFDLRCSARK----VFKQITIIIEE- 338
           C++ L+GC   +  S G        WR  T S+I    + + R+      + I ++I E 
Sbjct: 246 CVNILSGCTHQMLDSEGA-------WRAATESMIKLGNQLNHRQNLVSALQPIPVLISEA 298

Query: 337 ILNFEQQTALIVSEQI 290
           I++F+++   I ++ I
Sbjct: 299 IMHFQEKRDYITNKMI 314


>Z81459-2|CAB03828.2|  543|Caenorhabditis elegans Hypothetical
           protein F59D12.4 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = -1

Query: 502 CIDCLAGCRRSLASSAGLGFQLRR*WRVETRSVIDFDLRCSARK----VFKQITIIIEE- 338
           C++ L+GC   +  S G        WR  T S+I    + + R+      + I ++I E 
Sbjct: 246 CVNILSGCTHQMLDSEGA-------WRAATESMIKLGNQLNHRQNLVSALQPIPVLISEA 298

Query: 337 ILNFEQQTALIVSEQI 290
           I++F+++   I ++ I
Sbjct: 299 IMHFQEKRDYITNKMI 314


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +3

Query: 105 VCLHAQYKNACQNGALTGQISPSSQNTNIIRHQ----SLWTFIRIRGTK-----SLQQ*V 257
           +CLH  +K  C N    G   PS+ N   +R       L  FI I         ++ Q  
Sbjct: 69  ICLHKNFKKECFNFKGEGTAIPSTFNEETVRPWVELFHLEIFICILNFTLWIYLAIDQWK 128

Query: 258 RVRRSHGLRPSICSLTMSAVCCSKLRISSMMIVICLK-TFRALQRRSKSITLRVS 419
           R+ +   ++ SI  L++S  C   +RI    + IC+   + +     KSI L++S
Sbjct: 129 RIEKD--VKTSISMLSLS--CSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLS 179


>Z99281-7|CAC42379.1|   77|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9c protein.
          Length = 77

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 385 NEDRNQ*HYEFLPAITAGVETQVPPNSLTIFCSQLDSQCKQQNIS 519
           N + +  HY  LP I    ETQVP +  TIF   L      + I+
Sbjct: 26  NNNNHHHHYNNLPRIN---ETQVPQSKHTIFIRGLHGDISTEEIN 67


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 279 LRPSICSLTMSAVCCSKLRISSMMIVICLKTFRA 380
           ++PS C + M    CSK+R S +   + + T  A
Sbjct: 82  IKPSPCDMLMRTEFCSKIRASFLFAFLLVSTSHA 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,367
Number of Sequences: 27780
Number of extensions: 255269
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)