Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_F16
(529 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016... 49 2e-06
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 43 1e-04
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668... 40 0.001
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272... 38 0.007
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470... 33 0.14
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 32 0.33
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 3.1
08_01_0797 + 7711772-7712869 27 7.1
09_04_0248 + 16042870-16043207,16043288-16043491,16043630-160436... 27 9.3
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 27 9.3
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 27 9.3
>03_04_0019 +
16500877-16501029,16501184-16501240,16501560-16501668,
16501837-16502021,16502103-16502182,16502869-16503085,
16503394-16503633,16503720-16504028
Length = 449
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/44 (45%), Positives = 29/44 (65%)
Frame = +1
Query: 385 SAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIV 516
S ++ FV AL ++ I QHLR Y+NP EQ+WI+ +LF+V
Sbjct: 20 SVVLVGAAFVLVALLVSLWLILQHLRSYSNPEEQKWIIAVLFMV 63
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +1
Query: 322 ISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVR 501
++E ++ V + PI+ A + AGIFV T+L ++ ++ HL Y NP EQ+++V
Sbjct: 3 LAEQLYSVFRSYAPPIW-----ASITAGIFVITSLSLSLFLLFNHLSAYKNPEEQKFLVG 57
Query: 502 ILFIV 516
++ +V
Sbjct: 58 VILMV 62
>04_04_0803 -
28165828-28166136,28166257-28166505,28166628-28166889,
28168116-28168204,28168286-28168342,28168443-28168595
Length = 372
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/43 (34%), Positives = 29/43 (67%)
Frame = +1
Query: 388 AQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIV 516
A ++AG FV +L ++ I++HL Y NP EQ++++ ++ +V
Sbjct: 21 ATLVAGFFVLLSLSLSIYLIFEHLSAYNNPEEQKFVLGVILMV 63
>02_05_0259 -
27226378-27226398,27226643-27226813,27227063-27227284,
27227508-27227668,27227933-27227996,27228002-27228194,
27228499-27228587,27228668-27228852,27229671-27229779,
27229880-27229936,27230023-27230175
Length = 474
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +1
Query: 388 AQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIV 516
A +I+G F+ ++ ++ I+QHL Y NP EQ++++ ++ +V
Sbjct: 21 AILISGFFMLLSVSLSMYLIFQHLSAYNNPEEQKFVLGVILMV 63
>03_06_0530 -
34545699-34546013,34546121-34546354,34547006-34547078,
34548226-34548299,34548852-34549004
Length = 282
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 421 ALFITCQQIYQHLRWYTNPSEQRWIVRILFIV 516
A I IY+HL Y P QR+IVR++F+V
Sbjct: 19 ATVIALVHIYRHLLHYAEPIYQRFIVRLIFMV 50
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 394 VIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIV 516
V AGI V +L ++ I++HL Y P EQ++++ ++ +V
Sbjct: 12 VSAGISVTASLVLSLFLIFEHLCAYHQPEEQKFLIGLILMV 52
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 400 AGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFI 513
A V ++ T Q + QHL ++ NP EQ+ I+ I+ +
Sbjct: 24 AACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVLM 61
>08_01_0797 + 7711772-7712869
Length = 365
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 177 KIDGICVQYVCSVDYL*HLI-TKG 245
K+ +C+QY+CS+D + ++ TKG
Sbjct: 317 KLKDVCIQYICSLDEVDAMVRTKG 340
>09_04_0248 +
16042870-16043207,16043288-16043491,16043630-16043687,
16043806-16043868,16044282-16044332,16044811-16044838,
16045251-16045366,16045463-16045552,16045638-16045769,
16046071-16046223
Length = 410
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 325 SEIVHDVLKPLQEPIFLQTRSAQVIAGIFVFTALFITCQQIYQHLRW 465
+EIV DVLKP E I Q + +++G + + + I Q ++W
Sbjct: 327 TEIVEDVLKPRVESIGGQIKKV-ILSGTHLTPCIQALTKTILQDVKW 372
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = -1
Query: 340 REQFQKSAERLYSPYLWYSF*EFD-YKLLSHCFPFVIKCHR*STLHTYCTQIPSIFYTST 164
R FQ+ + LY P+ + S F ++L +C P LH YC + YT T
Sbjct: 76 RLHFQEGSFSLYEPFNYVSVRLFHKHRLWIYCNP---------ELHRYCGYTATPSYTDT 126
Query: 163 SYTIRF--DKTMVE*QLKHKL 107
+ +I + D+ +E + H +
Sbjct: 127 NTSITYVGDEGFIEAGINHNV 147
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 27.1 bits (57), Expect = 9.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +3
Query: 366 HIPADPQRAGHRG 404
+IP DP+R+GHRG
Sbjct: 269 YIPKDPKRSGHRG 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,729,332
Number of Sequences: 37544
Number of extensions: 240346
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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