Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_F12
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 182 3e-46
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 170 8e-43
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 120 7e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 1e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.025
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 30 1.2
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.6
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 6.6
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 6.6
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 8.7
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 8.7
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 8.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 182 bits (442), Expect = 3e-46
Identities = 84/148 (56%), Positives = 105/148 (70%)
Frame = +1
Query: 202 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 382 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 561
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 562 KXKAQLVVIAHDVDPIELVLFLPALCRK 645
+AQLV+IAHDV+P+E+VL LPALCRK
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRK 177
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 170 bits (413), Expect = 8e-43
Identities = 84/148 (56%), Positives = 105/148 (70%)
Frame = +1
Query: 202 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 382 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 561
+A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129
Query: 562 KXKAQLVVIAHDVDPIELVLFLPALCRK 645
+AQLV+IAHDV+P+E+VL LPALCRK
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRK 157
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 120 bits (290), Expect = 7e-28
Identities = 52/78 (66%), Positives = 65/78 (83%)
Frame = +1
Query: 202 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 382 KTTAKGLFKILEKYRPET 435
+A+ FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 1e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 202 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 381
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 523 IRSGTNTVTKLVEKXKAQLVVIAHDVDPIELVLFLPALC 639
++ G N TK + + ++++V+A D +P+E++L LP LC
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLC 73
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 477 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 358
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 520 TIRSGTNTVTKLVEKXKAQLVVIAHDVDPIELVLFLPALCRK 645
T+R G V K + + + + ++A +V PI++ +P +C +
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEE 109
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 350 LRSTNLPRHWTRLQLRA 400
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 300 PHPASEGCTSASSESAPSDQPIYPDTG 380
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 300 PHPASEGCTSASSESAPSDQPIYPDTG 380
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 546 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 415
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 546 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 415
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 546 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 415
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,165
Number of Sequences: 27780
Number of extensions: 248354
Number of successful extensions: 652
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -